Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq20199 140 5e-28 >seq20199 Length=1256174 Score = 140 bits (154), Expect = 5e-28 Identities = 392/585 (67%), Gaps = 20/585 (3%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || ||| || | | | || ||||| |||||||| || || | || || || | Sbjct 343989 TGTTCCCAATCCACTACCCTCAGATCTGGGAGATGTACAAGAAAGCCGAAGCATCTTTCT 343930 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||||| ||||| |||||||| || | ||| ||| ||||||| || | | | Sbjct 343929 GGACGGCTGAAGAAGTCGATCTATCTCAAGACGGTCGCGACTGGGAGAATC---TCAACG 343873 Query 125116 AAACTGAGCGAG--AGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173 | | ||| ||| | || || ||| | | || ||||| |||| || || ||||| Sbjct 343872 A--CGGAGAGAGGCACTTCATCAAACACGTCCTCGCTTTCTTCGCCGCATCTGACGGAAT 343815 Query 125174 CGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTC-CAGAGGTGTCG 125231 ||| ||| ||||| |||| ||| | || || || | | || | || | | || Sbjct 343814 CGTTCTCGAGAATCTCGCTTCACGGTTCATGTCC-GATGTG-CAAGTCTCTGAAGCG-CG 343758 Query 125232 TGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACT 125290 |||||| ||||| ||||| ||| ||||||||| | |||||||| |||||| | || Sbjct 343757 TGCTTTCTACGGGTTCCAGATCGCGATTGAGAATATCCACTCGGAGATGTACAGTCTCCT 343698 Query 125291 GATTGACATGTACATTCGCGATCCGCAACGTAA-ACACATGCTCTTTAACGCAATCGACA 125349 | |||| ||||| || | ||| | | | || |||||| || ||||| | Sbjct 343697 CCTCGACACTTACATCAAAGA-CAACAAAGAGAGAGACCATCTCTTTCGGGCCATCGAAA 343639 Query 125350 CGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT 125409 | | || | | |||||| || ||||||| || ||||||||||| || Sbjct 343638 CAATCCCTTGCGTCGCTAAAAAAGCCCAATGGGCCATGAAGTGGATCGATGGATCTCAGA 343579 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTA 125469 ||| ||| || ||| | || || ||||| ||| || || |||||||| || || | Sbjct 343578 CTTT---CGCTGAGAGAATCGTCGCCTTCGCTTGCGTCGAAGGTATCTTCTTCTCAGGCA 343522 Query 125470 GTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 | || ||| | ||||| ||||||||||| || || |||||||| || |||| | Sbjct 343521 GCTTCTGCT-CAATCTTCTGGCTCAAGAAACGAGGTCTCATGCCTGGGTTGACTTTCTCC 343463 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||||| || || |||||||| ||| ||||||| || || ||| Sbjct 343462 AACGAGTTGATCTCACGAGACGAAGGCTTACACTGCGATTTCGCC 343418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740861364983320