Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq18898 105 6e-18 seq20422 89.7 4e-13 >seq18898 Length=1351152 Score = 105 bits (116), Expect = 6e-18 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||| | ||| | ||| |||||||| ||||||||||||||||| | || |||| Sbjct 748870 AACACAAGGTGGAGCGTGGACTCCTTCTGAATATTGTAATCCGCGAGAGTACGTCCGTCT 748811 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || ||||| ||||| ||| | || ||||||||||| || || | |||||||| || Sbjct 748810 TCGAGCTGCTTACCGGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCTTTATCT 748751 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTC-CG-TTTCGACGGTAATG 19006 || || ||| || | | ||| || | ||| |||| || ||||| ||| ||| Sbjct 748750 TGGATCTTTGCTTTGACGTTGTCGATGGT---GTCAGAGCTCTCGACTTCGAGGGTGATG 748694 Query 19007 GTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| || || ||||| |||||||| || ||||| Sbjct 748693 GTTTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 748659 >seq20422 Length=233597 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| |||| | ||||||| ||| | |||||||||||| |||||||||||||| ||| Sbjct 131137 CCTCCACGCAGACGCAACACCAAGTGAAGCGTAGACTCCTTCTGAATATTGTAATCGGCC 131078 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||| ||||| || || || | || || | |||||||||| || Sbjct 131077 AAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGA 131018 Query 18935 ACGCCCTCTTTGTC 18948 | ||||||||||| Sbjct 131017 ATACCCTCTTTGTC 131004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414464891493658