Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq19979 96.9 2e-15 seq20655 91.5 9e-14 seq20422 91.5 9e-14 seq19059 91.5 9e-14 >seq19979 Length=600886 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||||||||||||| | ||| ||||| || || || ||||| |||| || || | Sbjct 465779 CGCAACACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGACCA 465720 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||||||||| || || | ||| |||||||||| ||| |||||||| || Sbjct 465719 TCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTG 465660 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || |||| ||| || || | | ||| ||||| | ||| || ||||| Sbjct 465659 TCCTGAATCTTAGCC---TTCACGTTATCAATGGTGTCAGAACTCTCAACTTCAAGAGTG 465603 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| |||||||| | || || |||||||| ||||| Sbjct 465602 ATCGTCTTTCCCGTCAAGGTCTTAACGAAAATCTGCAT 465565 >seq20655 Length=190867 Score = 91.5 bits (100), Expect = 9e-14 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | |||||||| || || ||||||||||| | ||| | | | Sbjct 174457 CGCAACACCAAGTGGAGAGTCGACTCCTTCTGGATATTGTAATCGGCTAAAGTACGGCCG 174516 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| ||||| || || || | | |||||| |||| || |||||||| || Sbjct 174517 TCTTCCAACTGCTTACCGGCGAAGATAAGCCTTTGCTGATCCGGAGGAATGCCTTCCTTA 174576 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| ||| || | | |||||||| | || || || || || ||| Sbjct 174577 TCCTGAATCTTGGCTTTAACGTTGTCGATCGTGTCAGAGCTTTCCACCTCGAGGGTGATC 174636 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || ||||| || ||||| || ||||| Sbjct 174637 GTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 174671 >seq20422 Length=233597 Score = 91.5 bits (100), Expect = 9e-14 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | || ||||| || || ||||||||||| | |||| || | Sbjct 131125 CGCAACACCAAGTGAAGCGTAGACTCCTTCTGAATATTGTAATCGGCCAAAGTGCGACCA 131066 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||||||||| || || | ||| ||||| |||| || || || ||||| Sbjct 131065 TCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGAATACCCTCTTTG 131006 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || | | ||| |||||| | || ||| |||| ||| || Sbjct 131005 TCCTGGATCTTGGCTTTAACGTTGTCAATAGTGTCGGAGCTTTCAACCTCCAAAGTGATA 130946 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||||||| || || || || || || ||||| Sbjct 130945 GTCTTTCCCGTCAGGGTCTTGACAAAGATCTGCAT 130911 >seq19059 Length=274371 Score = 91.5 bits (100), Expect = 9e-14 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | |||||||| || || ||||||||||| | ||| | | | Sbjct 257961 CGCAACACCAAGTGGAGAGTCGACTCCTTCTGGATATTGTAATCGGCTAAAGTACGGCCG 258020 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| ||||| || || || | | |||||| |||| || |||||||| || Sbjct 258021 TCTTCCAACTGCTTACCGGCGAAGATAAGCCTTTGCTGATCCGGAGGAATGCCTTCCTTA 258080 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| ||| || | | |||||||| | || || || || || ||| Sbjct 258081 TCCTGAATCTTGGCTTTAACGTTGTCGATCGTGTCAGAGCTTTCCACCTCGAGGGTGATC 258140 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || ||||| || ||||| || ||||| Sbjct 258141 GTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 258175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318694625876586