Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq20655 98.7 7e-16 seq19059 98.7 7e-16 >seq20655 Length=190867 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||| |||||||||||||| || | ||| |||| || | ||| ||||||||||| Sbjct 174252 CTCCTTTTGAATATTATAGTCAGCAAGAGTACGGCCATCCTCGAGTTGCTTTCCTGCAAA 174311 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 ||||||| |||||||||| | || | || || |||||| ||| || ||||| | Sbjct 174312 GATCAACCTTTGCTGGTCCGGTGGGATTCCCTCCTTATCTTGAATCTTAGCCTTGACATT 174371 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| ||| || | |||||| || | ||||| || || ||||| |||||||| || Sbjct 174372 GTCAATAGTGTCAGAACTCTCCACCTCCAAAGTAATAGTCTTTCCGGTCAAAGTCTTGAC 174431 Query 44110 AAATATTTGCAT 44121 || || ||||| Sbjct 174432 GAAAATCTGCAT 174443 >seq19059 Length=274371 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||| |||||||||||||| || | ||| |||| || | ||| ||||||||||| Sbjct 257756 CTCCTTTTGAATATTATAGTCAGCAAGAGTACGGCCATCCTCGAGTTGCTTTCCTGCAAA 257815 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 ||||||| |||||||||| | || | || || |||||| ||| || ||||| | Sbjct 257816 GATCAACCTTTGCTGGTCCGGTGGGATTCCCTCCTTATCTTGAATCTTAGCCTTGACATT 257875 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| ||| || | |||||| || | ||||| || || ||||| |||||||| || Sbjct 257876 GTCAATAGTGTCAGAACTCTCCACCTCCAAAGTAATAGTCTTTCCGGTCAAAGTCTTGAC 257935 Query 44110 AAATATTTGCAT 44121 || || ||||| Sbjct 257936 GAAAATCTGCAT 257947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354685255492836