Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq20655 84.2 2e-11 seq19059 84.2 2e-11 seq21172 82.4 6e-11 seq19979 82.4 6e-11 >seq20655 Length=190867 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||| || | | ||| ||||| || ||||| || || || || ||||| || || || Sbjct 173989 CCTCCACGGAGACGCAAGACCAAGTGAAGTGTTGACTCCTTCTGGATGTTATAGTCAGCC 174048 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| || |||||| | || || || ||| | || | |||||| ||||| || Sbjct 174049 AAAGTTCTACCATCTTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGAGGA 174108 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGT 20160 | || || ||||| ||| || |||||| | ||| | ||| || | ||| Sbjct 174109 ATACCCTCCTTGTCTTGAATCTTCGCTTTCACATTATCAATCGTATCAG-AGCTCTCCAC 174167 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||||| || || || |||||||| ||||||||||| ||||| Sbjct 174168 CTCCAAAGTAATAGTCTTTCCCGTCAACGTCTTGACAAAAATCTGCAT 174215 >seq19059 Length=274371 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||| || | | ||| ||||| || ||||| || || || || ||||| || || || Sbjct 257493 CCTCCACGGAGACGCAAGACCAAGTGAAGTGTTGACTCCTTCTGGATGTTATAGTCAGCC 257552 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| || |||||| | || || || ||| | || | |||||| ||||| || Sbjct 257553 AAAGTTCTACCATCTTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGAGGA 257612 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGT 20160 | || || ||||| ||| || |||||| | ||| | ||| || | ||| Sbjct 257613 ATACCCTCCTTGTCTTGAATCTTCGCTTTCACATTATCAATCGTATCAG-AGCTCTCCAC 257671 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||||| || || || |||||||| ||||||||||| ||||| Sbjct 257672 CTCCAAAGTAATAGTCTTTCCCGTCAACGTCTTGACAAAAATCTGCAT 257719 >seq21172 Length=998197 Score = 82.4 bits (90), Expect = 6e-11 Identities = 101/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| | |||||| || | ||| || ||||| ||||| || ||||||||||| | Sbjct 271996 CCACCTCTGAGCCTCAAGACGAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCCGC- 271938 Query 20042 ATAGTTTTAGA--ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 |||| || | |||||||| ||| || || ||| | || |||||||||||||| | Sbjct 271937 -TAGTGTTCGTCCATCTTCCAGTTGCTTACCGGCAAATATCAGCCTCTGTTGATCTGGTG 271879 Query 20100 GCACGCCTTCTTTGTC 20115 | | ||||||||||| Sbjct 271878 GTATACCTTCTTTGTC 271863 >seq19979 Length=600886 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | ||| | ||||||||| || |||||||| || || |||||||||||| || Sbjct 464879 CCACCACGGAGCCTTAGCACCAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGCC 464820 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC 20094 | ||| |||||||| || || || ||| | ||||||||||| ||||| Sbjct 464819 AAAGTACGGCCGTCTTCCAACTGCTTTCCAGCAAAGATAAGCCTCTGCTGATC 464767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419477986303317