Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq19979 100 2e-16 seq18898 95.1 1e-14 seq19776 93.3 4e-14 seq20422 86.0 5e-12 >seq19979 Length=600886 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | | || || || ||||| || |||||||||||||||||| || || Sbjct 475202 ACCTCCACGTAGACGCAAGACCAAGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCGGC 475143 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | | || | ||||| |||||||| || || | || | |||||| || ||| || Sbjct 475142 TAGTGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCCGGAGG 475083 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||||||| || || ||||| | | ||||| |||| | ||| Sbjct 475082 GATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCGGAACTCTCAAC 475023 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||| || || ||||||||||| || || ||||| |||||||| Sbjct 475022 CTCCAGTGTGATCGTCTTACCGGTGAGGGTCTTGACAAAGATCTGCAT 474975 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 ||||| || |||||||| |||||| || || ||||| |||||||| || |||| Sbjct 474958 AACACCAAGTGAAGTGTCGACTCCTTCTGGATATTGTAGTCAGCCAAAGTTCTACCGTCT 474899 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || |||||||| ||| | | || || | |||||||||| || | || ||||||||| Sbjct 474898 TCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGAGGGATACCTTCCTTGTCT 474839 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || |||| | | || || || | | |||| ||| | || ||||| Sbjct 474838 TGGATCTTGGCTTTGACATTGTCAATAGTGTCAGAACTCTCCACCTCCAAAGTGATGGTC 474779 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||||||||| || || || |||||||| Sbjct 474778 TTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 474747 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 || || || ||||| || |||||| || ||||||||||| |||||| || | ||| Sbjct 465548 AAGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCCAATGTGCGACCATCC 465489 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || |||||||| || || | || | ||||||||| ||| || | || ||| ||||| Sbjct 465488 TCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCTTTGTCT 465429 Query 48635 ATAATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 |||||| |||| | | | ||||| |||| |||| ||| | || ||||| Sbjct 465428 TGAATTTT-GGCTTTTACGTTGTCGATGGTGTCGGAGCTCTCCACCTCAAGAGTGATGGT 465370 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| | ||| || || || |||||||| Sbjct 465369 CTTCCCGGTCAAAGTCTTAACGAAGATCTGCAT 465337 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||| || |||||||| ||||| || || || |||| |||| |||||| ||| || | Sbjct 474709 TCCTTCTGGATGTTGTAGTCAGC-AAGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAA 474651 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || || | |||||| ||| || | | ||||| || ||||||| ||||| Sbjct 474650 GATCAATCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCTTGAATTTTCGCCTTGACGTT 474591 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| || | | |||| ||||| ||| || || || ||||||||||| || || Sbjct 474590 ATCGATGGTGTCAGAACTCTCCACCTCGAGTGTGATCGTCTTTCCGGTGAGAGTCTTGAC 474531 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 474530 GAAGATCTGCAT 474519 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| || |||||| || |||||||| || || || || | ||||| Sbjct 466001 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGACCATCCTCG 465942 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| || || | || | ||||||||| || || | | |||||||||| | Sbjct 465941 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGA 465882 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||| | | ||||| |||| |||| ||| | ||| ||||| ||| Sbjct 465881 ATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTCTTA 465822 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| | || ||||| ||||||||||| Sbjct 465821 CCGGTCAAGGTCTTCACGAAAATCTGCAT 465793 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 ||||| ||||||||||| |||||| || |||||||| ||||||| | || | ||| Sbjct 465776 AACACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGACCATCC 465717 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || |||||||| || || | || | ||||||||| ||| || | | |||||||||| Sbjct 465716 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCC 465657 Query 48635 ATAATTTT 48642 ||| || Sbjct 465656 TGAATCTT 465649 >seq18898 Length=1351152 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTC-GTCCTCCAGCTGCTTACCGCCGT 48593 ||||||||| |||||||| ||||| || ||| || |||||| |||||||| ||| || Sbjct 748622 CTCCTTTTGGATGTTGTAGTCAGC-AAGAGTCCTTCCGTCCTCGAGCTGCTTCCCGGCGA 748564 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | | |||||| ||| || | || |||||||||| || || ||||| | Sbjct 748563 AGATAAGTCTCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACAT 748504 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | ||||| || | ||| ||||| || ||||| || || ||||||||||||| Sbjct 748503 TGTCGATGGTGTCAGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCAGTGAGAGTTTTCA 748444 Query 48714 CAAAAATCTGCATC 48727 | || || |||||| Sbjct 748443 CGAATATTTGCATC 748430 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || |||||||| || |||||| || |||||||||||||||| || | ||||| Sbjct 749323 ACCAAATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAGAGTCCGACCATCCTCA 749264 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||| ||||| || | || | | |||||| || ||| | | ||||||||| | Sbjct 749263 AGCTGTTTACCAGCGAAGATGAGTCTCTGCTGGTCTGGCGGGATCCCTTCCTTGTCTTGA 749204 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || ||| ||| | | || || || | ||| ||||| || |||||||| Sbjct 749203 ATCTTCGCCTTCACGTTGTCAATTGTGTCAGAGCTCTCAACCTCGAGAGTAATGGTTTTT 749144 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| || || || ||||||||||| Sbjct 749143 CCGGTGAGGGTCTTGACGAAAATCTGCAT 749115 >seq19776 Length=1148151 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | |||||| || |||||| || |||||||| || || | | ||| |||| || Sbjct 756041 CACCAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTACGCCCGTCTTC 755982 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||| || ||| || |||| || | |||||| ||| || | | |||||||| Sbjct 755981 CAGCTGTTTCCCGGCGAAAATCAATCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTG 755922 Query 48637 AATTTTCTGCTTG---ATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 || ||| |||| || | || || || || | || ||| ||||| ||| ||||| Sbjct 755921 GATCTTC-GCTTTCACATTGTCG--ATCGTGTCCGACGATTCCACCTCGAGTGTGATGGT 755865 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 || || || || |||||||| || ||||||||||| Sbjct 755864 CTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCGT 755829 >seq20422 Length=233597 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| |||| | ||||| || |||||||| |||||| ||||||||||| || || Sbjct 131365 CCTCCACGCAGACGCAACACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCGGCT 131306 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | ||||| |||||||| || || | || | ||||||||| || || Sbjct 131305 AAAGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGA 131246 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || |||||| ||| || || ||||| | ||||| || | ||| | Sbjct 131245 ATACCTTCCTTATCCTGTATCTTGGCCTTGACGTTATCGATGGTGTCAGAGCTCTCTACC 131186 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| ||||| || ||||| || | || || ||||| |||||||| Sbjct 131185 TCGAGGGTTATTGTCTTACCAGTCAAGGTCTTGACAAAGATCTGCAT 131139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421141553183357