Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq19898 122 5e-23 seq18877 114 7e-21 seq20930 111 8e-20 seq19511 111 8e-20 seq19301 111 8e-20 seq20251 109 3e-19 seq19968 109 3e-19 seq18653 109 3e-19 seq19764 105 3e-18 seq19642 100 1e-16 seq20491 95.1 6e-15 seq19604 95.1 6e-15 seq19577 95.1 6e-15 seq21195 93.3 2e-14 seq13526 82.4 4e-11 >seq19898 Length=1026668 Score = 122 bits (134), Expect = 5e-23 Identities = 81/90 (90%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| |||||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 1007151 AAAAAT--AATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 1007208 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 |||| ||||||||||||||||||||| ||| Sbjct 1007209 CTCTAACCAACTGAGCTAATGGGCCGACGA 1007238 >seq18877 Length=263422 Score = 114 bits (126), Expect = 7e-21 Identities = 76/85 (89%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| || ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 160914 AAAAATAAAGATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 160973 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 160974 CTCTAACCAACTGAGCTAATGGGCC 160998 >seq20930 Length=458933 Score = 111 bits (122), Expect = 8e-20 Identities = 83/97 (86%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 11433 ATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 || ||| ||| ||||||| || | ||||||| | | |||||||| |||||||||||| Sbjct 298948 ATTGAAGTAAAAAAAAATGAAGT-GGCCCATACAGGTTTCGAACCTGTGACCTTCGCGTT 299006 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||| |||||||||||||||||||| Sbjct 299007 ATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 299043 >seq19511 Length=699395 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 56747 TTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 56806 Query 11515 CTGAGCTAATGGGCCGTC 11532 ||||||||||||||| || Sbjct 56807 CTGAGCTAATGGGCCTTC 56824 >seq19301 Length=165489 Score = 111 bits (122), Expect = 8e-20 Identities = 76/85 (89%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||| |||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 65657 AAAAATATAAT-GGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 65599 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 65598 CTCTAACCAACTGAGCTAATGGGCC 65574 >seq20251 Length=854191 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 545565 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 545506 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 545505 TGAGCTAATGGGCC 545492 >seq19968 Length=877202 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 265678 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 265619 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 265618 TGAGCTAATGGGCC 265605 >seq18653 Length=343123 Score = 109 bits (120), Expect = 3e-19 Identities = 82/96 (85%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||||| |||||| |||| |||| || | ||||||||||| |||||||||||||||| Sbjct 3150 AATTACGAAAAAAGAAAAT-GGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTA 3092 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||||||||| ||||||||||||||| |||| || Sbjct 3091 GCACGACGCTCTAACCAACTGAGCTAATAGGCCATC 3056 >seq19764 Length=121156 Score = 105 bits (116), Expect = 3e-18 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||| | ||| |||||||| | | |||||||| |||||||||||||||||||||| Sbjct 56453 TAAAATACTAAAGTGGCCCATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGA 56512 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 56513 CGCTCTAACCAACTGAGCTAATGGGCC 56539 Score = 104 bits (114), Expect = 1e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||||| Sbjct 58666 TGGCCCATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 58725 Query 11516 TGAGCTAATGGGCCGT 11531 |||||||||||||||| Sbjct 58726 TGAGCTAATGGGCCGT 58741 >seq19642 Length=374925 Score = 100 bits (110), Expect = 1e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| || | ||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 8185 TGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 8244 Query 11516 TGAGCTAATGGGCCGTC 11532 ||||||||| |||| || Sbjct 8245 TGAGCTAATAGGCCATC 8261 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| || | ||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 103674 TGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 103615 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 103614 TGAGCTAATAGGCC 103601 >seq20491 Length=240335 Score = 95.1 bits (104), Expect = 6e-15 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||| | ||| ||||| || | | |||||||| ||||||||||||||||||||||||| Sbjct 220245 AAATTAAAAATGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGC 220304 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 220305 TCTAACCAACTGAGCTAATAGGCC 220328 >seq19604 Length=1120120 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| || | ||||||||||| |||||||||||||||||||||||||||| |||| | Sbjct 990011 TGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 990070 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 990071 TGAGCTAATAGGCC 990084 >seq19577 Length=73653 Score = 95.1 bits (104), Expect = 6e-15 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 11449 ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCT 11508 || ||| ||||| || | | |||||||| |||||||||||||||||||||||||||| Sbjct 44005 ATTAAAATGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCT 43946 Query 11509 RACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||| Sbjct 43945 AACCAACTGAGCTAATAGGCC 43925 >seq21195 Length=1746141 Score = 93.3 bits (102), Expect = 2e-14 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| | | ||||| || | | |||||||| |||||||||||||||||||||||| Sbjct 1030546 AAAAAGAATAATGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACG 1030605 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 1030606 CTCTAACCAACTGAGCTAATAGGCC 1030630 >seq13526 Length=1119 Score = 82.4 bits (90), Expect = 4e-11 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 11481 GACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 1119 GACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 1071 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261423136864132