Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq19798 170 3e-38 seq18668 141 1e-29 seq21019 134 2e-27 seq18743 132 8e-27 seq20411 125 1e-24 seq18864 125 1e-24 seq17893 125 1e-24 seq20812 111 2e-20 seq19754 89.7 8e-14 >seq19798 Length=95302 Score = 170 bits (188), Expect = 3e-38 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||||||||| || || |||||||| |||||| | ||||||| Sbjct 93414 GAGACAACATCCAAGGAATCACCAAGCCTGCCATTCGTCGTCTTGCTCGTAGAGGTGGAG 93473 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || || | |||| || |||| | | ||| | |||||||||||| Sbjct 93474 TCAAGCGTATCAGCGGTCTCATCTACGAGGAGACCAGAGGTGTCCTCAAGATCTTCCTCG 93533 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || |||| ||| || || ||| ||||||||||| | ||||| |||||| Sbjct 93534 AGAATGTCATCCGTGACGCAGTCACCTACACCGAGCACGCCCGGAGGAAGACGGTCACCG 93593 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 |||||||| |||||||||| ||||| | ||||| |||| Sbjct 93594 CCATGGATGTCGTCTATGCTTTGAAGAGGCAAGGACGTA 93632 >seq18668 Length=151396 Score = 141 bits (156), Expect = 1e-29 Identities = 177/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| |||||||||||||| || || || | || |||||| | ||||||| Sbjct 3374 GAGACAACATCCAGGGAATCACCAAGCCGGCGATTCGGAGGCTTGCTCGTAGAGGTGGAG 3433 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || ||| | |||| || |||| |||| || | |||||||| | Sbjct 3434 TGAAGCGTATCAGTGGTCTCATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTTTTGG 3493 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| |||| ||| || || || ||||||||||| | | |||||||||||| Sbjct 3494 AGAACGTCATCCGTGACGCCGTCACTTACACCGAGCACGCCAGGAGGAAGACTGTCACCG 3553 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | |||||||| | || | ||||| | | | | || ||||| || ||| Sbjct 3554 CCATGGATGTTGTCTATGCGCTCAAGAGGCAAGGAAGGACGCTCTACGGTTTCGGCGGTT 3613 Query 16698 AAT 16700 ||| Sbjct 3614 AAT 3616 Score = 136 bits (150), Expect = 6e-28 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| |||||||||||||| || || || | || |||||| | ||||||| Sbjct 125080 GAGACAACATCCAGGGAATCACCAAGCCGGCGATTCGGAGGCTTGCTCGTAGAGGTGGAG 125021 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || ||| | |||| || |||| |||| || | |||||||| | Sbjct 125020 TGAAGCGTATCAGTGGTCTCATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTTTTGG 124961 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| |||| ||| || || || ||||||||||| | | |||||||||||| Sbjct 124960 AGAACGTCATCCGTGACGCCGTCACTTACACCGAGCACGCCAGGAGGAAGACTGTCACCG 124901 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||||||| | |||||||| | || | ||||| | | | | || ||||| || Sbjct 124900 CCATGGATGTTGTCTATGCGCTCAAGAGGCAAGGAAGGACGCTCTACGGTTTCGG 124846 >seq21019 Length=473892 Score = 134 bits (148), Expect = 2e-27 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| ||||| || |||||||||||||| ||||| || || |||||| | || | | || Sbjct 143622 TCTCCGAGACAATATCCAAGGAATCACGAAGCCGGCGATTCGTCGTTTAGCGAGGAGAGG 143563 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || || ||| || || ||| |||||||||||| ||||| |||| | |||||||| Sbjct 143562 TGGTGTGAAACGTATCAGCGGTTTGATCTATGAAGAGACTCGTGGTGTTCTCAAGATCTT 143503 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| || || | ||| ||| | || || ||||||||| | |||||||| Sbjct 143502 TCTCGAGAATGTGATTCGTGACGCTGTTACTTACACTGAGCACGCTCGTAGGAAGACTGT 143443 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || | |||||| | || ||||| ||||| | ||||| Sbjct 143442 TACTGCGATGGATGTTGTTTATGCGTTGAAGAGACAAGG 143404 >seq18743 Length=209373 Score = 132 bits (146), Expect = 8e-27 Identities = 190/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||| | | ||| ||||| ||||||||||| ||||| || || || || Sbjct 118081 GCCAAGAGGCATCGGAAAGTTCTCCGAGACAACATCCAAGGGATCACGAAACCTGCCATT 118140 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| | | || || || |||||| || ||| ||| |||| ||||||| | Sbjct 118141 CGTCGTCTGGCGAGAAGAGGAGGTGTGAAGCGTATCAGTGGTTTGATCTACGAAGAGACT 118200 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | |||||||| || ||| ||| |||| ||| || | ||| || ||| Sbjct 118201 CGCGGCGTTCTCAAGATCTTTCTAGAGAACGTCATCCGTGACGCCGTTACCTACACAGAG 118260 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || || || ||||| ||||||| |||| || || | || | || ||| Sbjct 118261 CACGCTCGTCGGAAAACAGTCACGGCCATGGACGTCGTTTACGCTCTCAAGAGGCAGGGC 118320 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | |||| || || || | |||| Sbjct 118321 CGGACTCTTTACGGATTCGGCGGCTAAT 118348 >seq20411 Length=12219 Score = 125 bits (138), Expect = 1e-24 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||||||||| || || || ||| |||||||||| ||||| | Sbjct 12143 GAGACAACATCCAAGGAATCACCAAGCCTGCCATTCGCCGTTTGGCTCGTCGAGGTGGTG 12084 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || || || |||| || |||| |||| || | |||||||| | Sbjct 12083 TCAAGCGTATCAGCGGTCTGATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTTTTGG 12024 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| |||| ||| || || || || |||||||| | ||||| || || Sbjct 12023 AGAACGTCATCCGTGACGCAGTCACTTACACTGAGCACGCACGGAGGAAGACGGTTACAG 11964 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| |||| || || | || | ||||| | | | || ||||| || ||| Sbjct 11963 CCATGGATGTCGTGTACGCTCTCAAGAGACAAGGAAGGACTCTCTACGGTTTCGGCGGTT 11904 Query 16698 AA 16699 || Sbjct 11903 AA 11902 >seq18864 Length=161385 Score = 125 bits (138), Expect = 1e-24 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||||||||| || || || ||| |||||||||| ||||| | Sbjct 155297 GAGACAACATCCAAGGAATCACCAAGCCTGCCATTCGCCGTTTGGCTCGTCGAGGTGGTG 155356 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || || || |||| || |||| |||| || | |||||||| | Sbjct 155357 TCAAGCGTATCAGCGGTCTGATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTTTTGG 155416 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| |||| ||| || || || || |||||||| | ||||| || || Sbjct 155417 AGAACGTCATCCGTGACGCAGTCACTTACACTGAGCACGCACGGAGGAAGACGGTTACAG 155476 Query 16638 CCATGGATATCGTCTATGC 16656 |||||||| |||| || || Sbjct 155477 CCATGGATGTCGTGTACGC 155495 >seq17893 Length=7261 Score = 125 bits (138), Expect = 1e-24 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||||||||| || || || ||| |||||||||| ||||| | Sbjct 6089 GAGACAACATCCAAGGAATCACCAAGCCTGCCATTCGCCGTTTGGCTCGTCGAGGTGGTG 6030 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || || || |||| || |||| |||| || | |||||||| | Sbjct 6029 TCAAGCGTATCAGCGGTCTGATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTTTTGG 5970 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| |||| ||| || || || || |||||||| | ||||| || || Sbjct 5969 AGAACGTCATCCGTGACGCAGTCACTTACACTGAGCACGCACGGAGGAAGACGGTTACAG 5910 Query 16638 CCATGGATATCGTCTATGC 16656 |||||||| |||| || || Sbjct 5909 CCATGGATGTCGTGTACGC 5891 >seq20812 Length=285325 Score = 111 bits (122), Expect = 2e-20 Identities = 168/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||| |||| ||||||||||||||||| ||||| || || | || || || ||| | || Sbjct 218433 CTTAGAGACAACATCCAAGGAATCACAAAGCCTGCGATTAGACGACTCGCACGTAGAGGA 218492 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||| | || |||||| | || ||||| | | | || ||||||||||| Sbjct 218493 GGCGTGAAGAGAATCAGCGGATTGATATACGAAGAAACAAGAGGAGTGTTGAAGATCTTT 218552 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||||| || ||| | ||||| |||||||| | | |||||||| Sbjct 218553 CTTGAGAATGTTATTAGAGACGCTGTGACTTATACTGAGCACGCGAGGAGGAAGACTGTT 218612 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| | || ||||| ||||| | ||||| |||| ||||||| || || Sbjct 218613 ACTGCGATGGATGTTGTGTATGCTTTGAAGAGACAAGGACGTACTCTTTATGGATTCGG 218671 >seq19754 Length=82288 Score = 89.7 bits (98), Expect = 8e-14 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| |||||||||||||| || || || | || |||||| | ||||||| Sbjct 82150 GAGACAACATCCAGGGAATCACCAAGCCGGCGATTCGGAGGCTTGCTCGTAGAGGTGGAG 82209 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || ||| | |||| || |||| |||| || | |||||||| | Sbjct 82210 TGAAGCGTATCAGTGGTCTCATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTTTTGG 82269 Query 16578 AGACCGTTATCCATGATGC 16596 ||| ||| |||| ||| || Sbjct 82270 AGAACGTCATCCGTGACGC 82288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79055673145401