Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq17269 614 7e-171 seq20510 578 5e-160 seq19338 416 4e-111 seq7960 132 6e-26 >seq17269 Length=4150 Score = 614 bits (680), Expect = 7e-171 Identities = 713/957 (75%), Gaps = 6/957 (1%) Strand=Plus/Plus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 ||||| | ||| | || ||||| || || || || || | || |||||||| || Sbjct 2742 TTCTGTAACTGGATAACTAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 2801 Query 135434 ATGATTCCTACTCTTCTCG-CAGCTGCTATCTGCTTTATTGTTGCTTTCATCGCTGCACC 135492 ||||| ||||| ||| | | | || || | |||||| | || ||||| ||||| || Sbjct 2802 ATGATCCCTAC-CTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 2860 Query 135493 TCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAA 135552 ||| || |||||||| || || || ||||||||| |||| ||||| | |||||||| || Sbjct 2861 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 2920 Query 135553 CATCATCTCTGGTGCTGTTATCCCTTCTA--GCAACGCCATCGGCCTTCACTTCTATCCC 135610 || || || ||||| |||| ||| || ||| || || || | || || || || Sbjct 2921 TATTATTTCAGGTGCCATTATTCCTACTTCTGCA--GCTATTGGTTTGCATTTTTACCCG 2978 Query 135611 ATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTG 135670 |||||||||||||| || ||||||| |||||||| ||||||||||||||| ||||| | Sbjct 2979 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAATGGTGGTCCTTATGAACTAATT 3038 Query 135671 GTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTAC 135730 || | ||||| | | ||||| | ||| |||||||| ||||||||||| || | Sbjct 3039 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 3098 Query 135731 CGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACT 135790 || ||||||||||| ||||||||| ||| || || ||||| |||||||| ||||||||| Sbjct 3099 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACT 3158 Query 135791 GCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGC 135850 ||||||||| || ||||||| |||| ||||| ||| |||||||||||| || || Sbjct 3159 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 3218 Query 135851 ATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCAT 135910 || ||||| ||||| |||| ||| |||| |||||||| || ||||||||||| ||||| Sbjct 3219 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 3278 Query 135911 CCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCAT 135970 || || |||||||| || || ||||| || ||||| || || || || ||||||||| Sbjct 3279 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAC 3338 Query 135971 GGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTAT 136030 || || | || || |||||| | | | || || || || ||||| || | Sbjct 3339 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 3398 Query 136031 GGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTC 136090 ||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||| || Sbjct 3399 GGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTT 3458 Query 136091 GGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTT 136150 || || |||||||||||||||| |||||||| |||||||| |||| || ||| | Sbjct 3459 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 3518 Query 136151 GCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTC 136210 || |||||||| || || ||||| |||||| |||| | || | ||| ||||| ||| Sbjct 3519 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTC 3578 Query 136211 AACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAAC 136270 ||||| ||||| ||||| |||||||| || | || | | |||| ||||| | || Sbjct 3579 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAAT 3638 Query 136271 ACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 || ||||| ||| | | || |||||| || |||||||| || ||||| || ||| Sbjct 3639 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 3695 >seq20510 Length=252746 Score = 578 bits (640), Expect = 5e-160 Identities = 736/1009 (73%), Gaps = 12/1009 (1%) Strand=Plus/Plus Query 137875 TGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTT 137934 ||||||||||| | | || ||||| || ||||| ||||||||||| ||| | || | Sbjct 62287 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 62346 Query 137935 TTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCT 137994 |||| ||| ||||| || | || || ||| | || || ||||| ||||| || | Sbjct 62347 TTCCGTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 62406 Query 137995 GGTACACCCACGGGTTGGCGTCTAGTT---ATCTTGAAGGCGCTAATTTCCTCACAGCAG 138051 |||| || || || ||||| ||||| || | ||||| ||||| | || || | Sbjct 62407 GGTATACTCATGGATTGGC---TAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTG 62463 Query 138052 CTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGT 138111 | ||||| ||||||||| || | | | |||||| | | |||| ||||||||||| Sbjct 62464 CAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAG 62523 Query 138112 CTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCC 138171 | ||||||||| | || |||| ||| | || || || ||| ||||||| || |||| Sbjct 62524 CACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCC 62583 Query 138172 ACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTA 138230 |||| || || | || || || ||| | || || ||||| | |||| |||| | Sbjct 62584 ACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTT- 62642 Query 138231 GGCA--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCG 138288 || | || || || || |||||||||||||||||||| || ||||| || || | Sbjct 62643 --CAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTG 62700 Query 138289 TGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGG 138348 | || || || ||||| | |||||||| ||||||||||||| || |||||||| | Sbjct 62701 TCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAG 62760 Query 138349 CAGCAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCT 138408 | || || || |||||| | | || | || || || ||||| ||||| | ||||| | Sbjct 62761 CGGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACATTGAACCCAT 62820 Query 138409 TTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTG 138468 ||||||||||||| || || ||| | || || | |||||||| || ||||||||||||| Sbjct 62821 TTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTG 62880 Query 138469 CTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTG 138528 |||| |||||||||||||| | ||||||||| || ||||||| || || ||| Sbjct 62881 CTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTA 62940 Query 138529 AACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAA 138588 | || ||||||| |||||||| ||||||||||| || |||||||| | ||||| |||| Sbjct 62941 ACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAA 63000 Query 138589 TCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCG 138648 ||||||| |||||||| ||||| |||||| | || ||||||||| | ||||| || | Sbjct 63001 TCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGG 63060 Query 138649 TCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGT 138708 | | ||| | |||| ||| | |||| | | ||||| ||| | |||||||| || | Sbjct 63061 TAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCT 63120 Query 138709 ATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACA 138768 |||| ||||| || || ||||| |||||||| |||||||| ||||| ||||| ||||| | Sbjct 63121 ATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATA 63180 Query 138769 CCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTC 138828 | || || |||||| | || |||||| | || || |||||||| || ||||| |||| Sbjct 63181 CTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTC 63240 Query 138829 ACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 | |||||| || | || ||||| || || | ||| | || |||||||| Sbjct 63241 ATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 63289 >seq19338 Length=76300 Score = 416 bits (460), Expect = 4e-111 Identities = 613/858 (71%), Gaps = 15/858 (2%) Strand=Plus/Plus Query 138027 GAAGGCGCTAATTTCCTCACAGCAGCTGTTTCGACTCCTGCTGATGCTATGGGTCATTCT 138086 ||||| | ||||| | || || || |||| ||||||||| || | | | |||||| Sbjct 38317 GAAGGTTCCAATTTTTTAACTGCTGCAGTTTTTACTCCTGCTAATATTTTAGCGCATTCT 38376 Query 138087 CTTCTTCTACTTTGGGGTCCTGAGTCTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGG 138146 | | |||| ||||||||||| | ||||||||| | || |||| ||| | || Sbjct 38377 TTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGC 38436 Query 138147 GGACTCTGGACTTTTGTGGCGCTCCACGGGGCCTTTAGTCTGATTGGATTC-ATGCTTCG 138205 || | || || ||| || ||||||| || || | || || || ||| | || Sbjct 38437 GGTATGTGCGATTATGTTGCTGTCCACGGTGCTTTCGCATTAATAGGTTTTTATGTTACG 38496 Query 138206 CCAGTTTGAGATCTCTCG-TCTGGTAGGCA--TCCGTCCCTACAACGCAATCGCATTCTC 138262 || ||||| | |||| || | | || | || || || || |||||||||||||| Sbjct 38497 TCAATTTGAACTTGCTCGATCCGTT---CAATTGCGACCTTATAATGCAATCGCATTCTC 38553 Query 138263 TGGTCCCATCGCTGTGTTCGTCAGCGTGTTCCTGATGTATCCTTTGGGTCAATCCAGTTG 138322 |||||| || ||||| || || | || || |||||||| | |||||||| |||| Sbjct 38554 TGGTCCAATTGCTGTTTTTGTTTCTTTCTTTCTAATGTATCCACTAGGTCAATCTGGTTG 38613 Query 138323 GTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAATCTTCCGATTC---CTGTTGTTCCTTCA 138379 ||||||||| || |||||||| || || | || |||||| || || |||| | Sbjct 38614 GTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTTTATTTCGATTCATCCTCTTTTTCCA--A 38671 Query 138380 GGGTTTCCATAACTGGACCCTCAACCCCTTTCATATGATGGGCGTAGCAGGTATTCTTGG 138439 ||||||| |||| ||||| | ||||| |||||||||||||| || || ||| | || | Sbjct 38672 GGGTTTC-ATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGA 38730 Query 138440 TGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGG 138499 | |||||||| || ||||||||||||||||| ||| |||||||||| | | ||||||| Sbjct 38731 CGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGTA-AAAATACTTTATTTAAAGATGG 38789 Query 138500 CGAACAATCAAATACTTTTAAAGCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAAT 138559 || ||||||| || | ||| | || ||||||| ||||||||| |||||||| Sbjct 38790 TGATGGTGCAAATACATTCCGTACTTTTAACCCAACTCAAGCAGAAGAAACTTATTCAAT 38849 Query 138560 GGTTACTGCTAACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTG 138619 ||| || ||||||| | ||||| ||||||||||| ||||||| |||||| |||| Sbjct 38850 GGTCACCGCTAACCACTTTTGGTCACAAATCTTTGGGGCTGCTTTTTCCAATAAGTGTTG 38909 Query 138620 GCTTCACTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTAT 138679 | || | ||||||| | ||||| || || ||| | | || ||| | |||| | Sbjct 38910 GTAACATTCCTTTATGTTATTTGTACCGGTACCAGGTTTATTGATGAGTGCTCTTGGAGT 38969 Query 138680 TATTGGTCTTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGC 138739 | ||||| ||| | ||||||| | ||||| ||||| || || |||||||||||||| Sbjct 38970 AGTCGGTCTAGCTTTGAACCTACATCCCTATGACTTCGTTTCCCAGGAAATTCGTGCAGC 39029 Query 138740 AGAAGATCCTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCG 138799 |||||||| ||||| ||||| ||||| || || || |||||| | || |||||| | || Sbjct 39030 GGAAGATCCGGAATTTGAGACTTTCTATACTAA-AATATTCTTTTAAACGAAGGTATTCG 39088 Query 138800 TGCCTGGATGGCTCCTGTGGATCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGTATT 138859 || ||||| || || ||||| ||||| |||||| || | || ||||| || || | Sbjct 39089 CGCTTGGATTGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCT 39148 Query 138860 GCCAAGAGGCAACGCTCT 138877 ||| | | |||||||| Sbjct 39149 ACCACGTGAAAACGCTCT 39166 >seq7960 Length=315 Score = 132 bits (146), Expect = 6e-26 Identities = 126/160 (79%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 138696 AACCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTC 138755 |||||||| || ||||| ||||| || || ||||| ||| |||| |||||||||||||| Sbjct 3 AACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTACAGCGGAAGATCCTGAATTT 62 Query 138756 GAGACCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCT 138815 ||||| ||||||||||| || |||||| | || || ||| | ||||| ||| |||| || Sbjct 63 GAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGCTGGCGGCT 122 Query 138816 GTGGATCAACCTCACGAAAA-CTTTGTTTTTCCTGAAGAA 138854 ||||| ||||| ||||| | || | || ||||| ||| Sbjct 123 CAAGATCAGCCTCATGAAAACCCTTATATTCCCTGATGAA 162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627800356092800