Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq17269 513 2e-140 seq20510 161 2e-34 >seq17269 Length=4150 Score = 513 bits (568), Expect = 2e-140 Identities = 684/945 (72%), Gaps = 4/945 (0%) Strand=Plus/Plus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668 |||| |||||||||||| | |||||||| | ||| | | | ||||| | ||||| Sbjct 2782 TTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATT 2840 Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 | |||||||| || || ||||| || ||||| || || || |||||||| || |||| Sbjct 2841 ATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 2900 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || | | || || ||||| || || || ||||| || |||| |||| || || Sbjct 2901 TCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATT 2960 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848 ||||| || || || || ||||||||||| ||| | ||||||| ||||| ||||||||| Sbjct 2961 GGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAATGGT 3020 Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908 |||||||| | | | | | ||||| | | || | | || ||||| | Sbjct 3021 GGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGT 3080 Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968 ||||||||||| | |||| | ||||||||||||||||| |||||| |||||||| Sbjct 3081 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 3140 Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCA 212028 ||||| |||| ||| ||||| ||| | | |||||| | ||||| || || || Sbjct 3141 CCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCT 3200 Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088 || ||||||||| |||| || || || || |||||||| ||| | |||||||| || || Sbjct 3201 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAG 3260 Query 212089 CATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCA 212148 || ||||| |||||||||||||| || ||| |||||| || ||| | ||||| || | Sbjct 3261 CACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 3320 Query 212149 TTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGT 212208 |||| ||||||||||||||| | || || ||| | ||| | |||||||| | Sbjct 3321 CTATTTAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 3380 Query 212209 TTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTT 212268 || || || | ||||||| ||||| ||||||||||| || || ||||| || Sbjct 3381 AATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTA 3440 Query 212269 GCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGA 212328 ||||| || || || || || || | |||||||| ||||| |||||||| | Sbjct 3441 GCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGT 3500 Query 212329 AGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGT 212388 |||||| |||||| | || | ||||| || | || | ||||| || || | ||| Sbjct 3501 TCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGT 3560 Query 212389 ATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCA 212448 || | || ||||| |||||||||||||| ||||| |||||||||||||| |||||| Sbjct 3561 ATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGAT-AG 3619 Query 212449 TCAGGTAAG-GTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGA 212507 ||| | | | ||| || |||||||| |||| || ||||| | || |||||||||||||| Sbjct 3620 TCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGA 3679 Query 212508 AGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 ||||||||| ||| | ||||| ||||||||||| || ||| |||| Sbjct 3680 AGTTATGCATGAACGTAATGCTCACAACTTCCCGCTAGACCTAGC 3724 >seq20510 Length=252746 Score = 161 bits (178), Expect = 2e-34 Identities = 147/183 (80%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 212371 TGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAAC 212430 ||||| || || | ||||| | || ||||| |||||||||||||| ||||| |||||| Sbjct 30756 TGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAAC 30697 Query 212431 CAATCAGTTGTTGATGCATCAGGTAAG-GTTGTTCCTACTTGGGGTGATGTTCTTAACAG 212489 |||||||| |||||| ||| | | | ||| || |||||||| |||| || ||||| | Sbjct 30696 CAATCAGTCGTTGATAG-TCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCG 30638 Query 212490 AGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTT 212549 || ||||||||||||||||||||||| ||| | ||||| ||||||||||| || ||| | Sbjct 30637 TGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCGCTAGACCT 30578 Query 212550 AGC 212552 ||| Sbjct 30577 AGC 30575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807339613044920