Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq17269 538 4e-148 seq20510 387 2e-102 seq19338 226 3e-54 >seq17269 Length=4150 Score = 538 bits (596), Expect = 4e-148 Identities = 723/1001 (72%), Gaps = 4/1001 (0%) Strand=Plus/Plus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || ||| | ||| |||| |||||| ||||| | ||| |||| ||||||||||| || Sbjct 2742 TTCTGTAACTGGATAACTAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 2801 Query 170726 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 170784 |||||||| | ||| | || || || | ||| ||| | |||||||| |||||||| Sbjct 2802 ATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 2860 Query 170785 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACA 170843 |||||| ||||| || || || | ||||| ||| | || ||| ||||| || || |||| Sbjct 2861 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTT-TACGGAAACA 2919 Query 170844 ACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCA 170903 | || || || ||||| | |||| |||| || || || || || || || || | Sbjct 2920 ATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGA 2979 Query 170904 TCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTA 170963 |||||||||| || | | || || ||| | ||||| || |||||||| | || || Sbjct 2980 TCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAATGGTGGTCCTTATGAACTAATTG 3039 Query 170964 TTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACA 171023 || | ||||| | |||| | || || |||||| | |||||||||| | | Sbjct 3040 TTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 3099 Query 171024 GACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTG 171083 | || || ||| | |||||||| ||| ||||| ||||| ||||| | || || || Sbjct 3100 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 3159 Query 171084 CAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTA 171143 | || ||| | | || ||| | ||||| || || |||||||||||||| ||||| | Sbjct 3160 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 3219 Query 171144 TCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACC 171203 |||| ||||| |||||||| ||| | || ||||| || || |||||||| || ||||||| Sbjct 3220 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 3279 Query 171204 CCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACG 171263 | || || ||| ||||||||| ||| | ||||| || || || ||||| ||||||| Sbjct 3280 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCACG 3339 Query 171264 GTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACG 171323 |||| | || || ||| | | ||||| || || || || || || | || | | Sbjct 3340 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 3399 Query 171324 GCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCG 171383 | || | ||||| |||||||||||||| || |||||||| |||||||| || || || | Sbjct 3400 GTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 3459 Query 171384 GTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCG 171443 | |||| |||||||| ||||| |||||||| |||||||| ||||| |||||| | | Sbjct 3460 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 3519 Query 171444 CTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCA 171503 | | | || ||||| || | ||||| || || | ||||| |||| ||||| |||| Sbjct 3520 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 3579 Query 171504 ACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAA 171563 |||| || || ||||| |||||||||||||| || ||| | ||| || | | Sbjct 3580 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 3639 Query 171564 CATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATG 171623 | |||| ||| || ||||| | || |||||||| |||||||||||||||||| | |||| Sbjct 3640 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 3699 Query 171624 CACACAACTTCCCACTAGACCTAGCATCTGCTGAGTCTACA 171664 | ||||||||||| ||||||||||| ||| |||| || || Sbjct 3700 CTCACAACTTCCCGCTAGACCTAGCTGCTGTTGAGGCTCCA 3740 >seq20510 Length=252746 Score = 387 bits (428), Expect = 2e-102 Identities = 715/1049 (68%), Gaps = 21/1049 (2%) Strand=Plus/Plus Query 171784 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 171843 ||| ||| | ||||| || | ||||| |||||| ||| || || ||||| || | | Sbjct 62266 AAAAAGATTTATTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAG 62325 Query 171844 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 171903 | ||||||||||| || || || || ||||| || | || | || ||||||||| || Sbjct 62326 GTTGGTCTGGTCTATTGCTCTTTCCGTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAG 62385 Query 171904 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 171963 | || || || || || |||||||| || ||||| | || || ||| | || || Sbjct 62386 GTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTT 62445 Query 171964 CAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 172023 || |||||||| || ||||| || || |||| | || | | | ||| | | |||| Sbjct 62446 GCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGT 62505 Query 172024 TCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 172083 | || ||||| ||||| |||||||||||| || || |||| ||||||||| || || | Sbjct 62506 TACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGT 62565 Query 172084 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTG 172143 || ||||| || | || || | || | | | |||||||| ||| | | || |||| Sbjct 62566 GGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTG 62625 Query 172144 AGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTG 172203 | |||| || |||| | || ||||| || ||| | |||||||| | |||| Sbjct 62626 AACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTG 62685 Query 172204 CAGTATTCACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCAC 172263 | || || |||||||||| |||||| ||||||| | |||||||||| || | Sbjct 62686 CTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGC 62745 Query 172264 CTTCATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATA 172323 || |||||||| || || || ||||| | || | || | || || || || ||| Sbjct 62746 CTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATT 62805 Query 172324 TAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTAT 172383 || | || ||||||||||||||||| || || ||| |||| || | || | |||| Sbjct 62806 GGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTAT 62865 Query 172384 GTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTG 172443 | || || |||||||| || ||| | || || || | |||||| || Sbjct 62866 GCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGA---------------TG 62910 Query 172444 AAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTT 172503 | | | | ||| |||| ||| | || || | || || || | |||||||||| Sbjct 62911 --GTGATGGTGCAA-ATACA---TTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTT 62964 Query 172504 ATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACA 172563 || ||| | || |||||| | || |||||||| || ||||| | || ||||| || | Sbjct 62965 ATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATA 63024 Query 172564 AAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTA 172623 || | | ||||| ||| ||||||| || ||||| || | ||| | |||| || Sbjct 63025 AACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTC 63084 Query 172624 TAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAA 172683 | || | || ||||| || | ||||| | || || ||||| || || || || || Sbjct 63085 TTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCC 63144 Query 172684 GAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAG 172743 | ||||| ||||| || || ||||| || ||||| ||||| || |||||| | || |||| Sbjct 63145 GTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAG 63204 Query 172744 GTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAG 172803 |||| | || |||||| | || ||||| || ||||| ||| || | ||||| || | Sbjct 63205 GTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 63264 Query 172804 AAGTCTTGCCACGAGGCAACGCACTATAA 172832 | || | ||||| || ||||| || ||| Sbjct 63265 AGGTTCTACCACGTGGAAACGCTCTTTAA 63293 Score = 145 bits (160), Expect = 9e-30 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 171467 TGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAAC 171526 ||||| || || | ||||| |||| ||||| |||||||| || || ||||| |||||| Sbjct 30756 TGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAAC 30697 Query 171527 CAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGA 171586 |||||||| || ||| | ||| || | || |||| ||| || ||||| | Sbjct 30696 CAATCAGTCGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGT 30637 Query 171587 GCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTA 171646 || |||||||| |||||||||||||||||| | ||||| ||||||||||| ||||||||| Sbjct 30636 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCGCTAGACCTA 30577 Query 171647 GCATCTGCTGAGTCTACA 171664 || ||| |||| || || Sbjct 30576 GCTGCTGTTGAGGCTCCA 30559 >seq19338 Length=76300 Score = 226 bits (250), Expect = 3e-54 Identities = 573/868 (66%), Gaps = 24/868 (3%) Strand=Plus/Plus Query 171966 AACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTC 172025 || ||||||||||| ||||| | || |||| | || | | | ||| | | ||||| Sbjct 38326 AATTTTTTAACTGCTGCAGTTTTTACTCCTGCTAATATTTTAGCGCATTCTTTGTTGTTA 38385 Query 172026 CTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGG 172085 || ||||| ||||| |||||||||||| || || |||| ||||||||| || | || Sbjct 38386 CTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTATGTGC 38445 Query 172086 AACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTC-ATGCTTAGACAGTTTGA 172144 | | ||| || | || || | || | | | |||||||| ||| | | || ||||| Sbjct 38446 GATTATGTTGCTGTCCACGGTGCTTTCGCATTAATAGGTTTTTATGTTACGTCAATTTGA 38505 Query 172145 GATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGC 172204 |||| || ||| | || ||||| || ||| | |||||||| | ||||| Sbjct 38506 ACTTGCTCGATCCGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGC 38565 Query 172205 AGTATTCACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACC 172264 || || |||||||||| |||||| ||||||| | |||||||||| || || Sbjct 38566 TGTTTTTGTTTCTTTCTTTCTAATGTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCC 38625 Query 172265 TTCATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATAT 172324 | |||||||| || || | ||||| | || | || | || || || || ||| Sbjct 38626 TAGTTTTGGTGTAGCGGCTTTATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTG 38685 Query 172325 AACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATG 172384 || | || ||||||||||||||||| || || ||| |||| | | || | ||||| Sbjct 38686 GACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGACGCGGCTCTGCTATG 38745 Query 172385 TGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGA 172444 || || |||||||| || ||| | || || || | | |||| || Sbjct 38746 CGCTATTCATGGTGCTACTGTA-AAAATACTTTATTTAAAGA---------------TG- 38788 Query 172445 AGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTA 172504 | | | | ||| |||| ||| | | || | || || || | |||||||||||| Sbjct 38789 -GTGATGGTGCAA-ATACA---TTCCGTACTTTTAACCCAACTCAAGCAGAAGAAACTTA 38843 Query 172505 TAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAA 172564 | ||| | || |||||| || |||||||| || ||||| || ||||| || || Sbjct 38844 TTCAATGGTCACCGCTAACCACTTTTGGTCACAAATCTTTGGGGCTGCTTTTTCCAATAA 38903 Query 172565 AAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTAT 172624 | | | ||| | | ||||||| || ||||| || ||| | | || || | Sbjct 38904 GTGTTGGTAACATTCCTTTATGTTATTTGTACCGGTACCAGGTTTATTGATGAGTGCTCT 38963 Query 172625 AGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAG 172684 || | || ||||| || | ||||| | || ||||| || || || || || | Sbjct 38964 TGGAGTAGTCGGTCTAGCTTTGAACCTACATCCCTATGACTTCGTTTCCCAGGAAATTCG 39023 Query 172685 AGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGG 172744 ||||| ||||| || || ||||| || ||||| ||||| || |||||| | || ||||| Sbjct 39024 TGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAA-AATATTCTTTTAAACGAAGG 39082 Query 172745 TATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGA 172804 ||| | || ||||| | || ||||| || ||||| ||| || | ||||| || || Sbjct 39083 TATTCGCGCTTGGATTGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGA 39142 Query 172805 AGTCTTGCCACGAGGCAACGCACTATAA 172832 || | ||||| | ||||| || ||| Sbjct 39143 GGTTCTACCACGTGAAAACGCTCTTTAA 39170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570116559615480