Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq20199 170 2e-37 >seq20199 Length=1256174 Score = 170 bits (188), Expect = 2e-37 Identities = 402/599 (67%), Gaps = 6/599 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || |||||||||||||| | || ||||||| || | |||||||| || || | Sbjct 343416 CAGGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATCAACTCGTTGGAGAAAGTCAAC 343475 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || || || || || ||||| || || || ||| || || |||||| Sbjct 343476 CCAGGCATGAGACCTCGTTTCTTGAGCCAGAAGATTGAGCAGAAGCTGCCTGAGAAGAAG 343535 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC-TCCATAACCGGCGCTGTCATGTAT 33482 || ||||| || ||| ||||| | | |||||| | | | | | | | ||| || Sbjct 343536 ATACCTTCGACGCAAGCGAAGGCGACGATTCTCTCAGCGAAAGTCTGAGAT-CCATCGAT 343594 Query 33483 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33542 |||||| ||||| | ||| || || || ||||| || ||||| ||||| ||| Sbjct 343595 CCACTTCATGGCCCATTGGGCTTTTTTAGCGACGCAAGGGATTGTTTCGATGGCCCGAAA 343654 Query 33543 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 33602 ||||| || | | || || | ||||| | ||||| |||| | ||||| ||||| || Sbjct 343655 GAGATGGTCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGGAGGAGACTGTACATCTC 343714 Query 33603 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 33662 ||| || || || ||||| || ||||| || ||||||||| | || || | | || Sbjct 343715 CGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCTTCAGAGACTTG 343774 Query 33663 TACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 33721 || || | ||| || ||| || | ||| || || ||||||||| || || | Sbjct 343775 CACATC-GGACATGAACCGTGAAGCGAGATTCTCGAGAACGATTCCGTCAGATGCGGCGA 343833 Query 33722 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCA 33780 | || || | || ||||| || || | | || || | ||| || || | ||| || Sbjct 343834 AGAAAGCGAGGACGTGTTTGATGAAGTGCCTCTC-TCCGTCGTTGAGATTCTCCCAGTCG 343892 Query 33781 TTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 33840 |||| ||||| ||| |||||||| | ||||| || ||||| || || || || Sbjct 343893 CGACCGTCTTGAGATAGATCGACTTCTTCAGCCGTCCAGAAAGATGCTTCGGCTTTCTTG 343952 Query 33841 TACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGG 33899 ||||| | |||||| | | || ||||||||||| ||| ||||| | ||| |||| Sbjct 343953 TACATCTCCCAGATCTGAGGGTAGTGGATTGGGAACATACAGAATCTGTCTGGGGTTGG 344011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622780896458120