Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq20422 96.9 3e-15 seq21172 91.5 1e-13 seq19630 91.5 1e-13 >seq20422 Length=233597 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | || ||||| | ||||| | || | ||| | Sbjct 130455 ATGCAGATCTTTGTTAAGACTCTCACCGGAAAGACCATCACTTTGGAGGTTGAAAGCTCC 130514 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| |||||| || ||||| || || ||||| ||||| Sbjct 130515 GACACCATCGACAACGTCAAGGCAAAGATCCAGGATAAAGAGGGTATCCCTCCGGATCAG 130574 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || ||||| | || ||||| || |||||||| | | | | | | |||||| ||| Sbjct 130575 CAGAGGCTCATCTTCGCTGGCAAGCAGCTCGAAGACGGTCGCACCTTAGCCGACTACAAC 130634 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 |||||||| || || ||| | ||||| || || || || Sbjct 130635 ATTCAAAAGGAGTCGACTTTACATCTTGTTCTCAGGCT 130672 >seq21172 Length=998197 Score = 91.5 bits (100), Expect = 1e-13 Identities = 111/148 (75%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||||||||| ||||| || |||||||| || || || | | ||| || ||||| ||| Sbjct 271863 GACAAAGAAGGTATACCACCAGATCAACAGAGGCTGATATTTGCCGGTAAGCAACTGGAA 271922 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| | ||| ||| || || ||||| || ||||| |||||| | ||||| ||| | Sbjct 271923 GATG-GACGAACACTAGCGGATTACAACATCCAGAAAGAGTCTACTCTTCATCTCGTCTT 271981 Query 26981 GAGACTTAGAGGAGGAAAAATATGATTA 27008 ||| || ||||| || | |||||||| Sbjct 271982 GAGGCTCAGAGGTGG--TACTATGATTA 272007 >seq19630 Length=159711 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || | |||||| |||| | || || Sbjct 121735 AAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTCGAGGTCGAGTCC 121676 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||||||||| | ||||| ||||| ||||||||||| || ||||| ||| Sbjct 121675 TCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCTCCGGAT 121616 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG 26925 || || ||||| || | || ||| ||||| |||||||||| Sbjct 121615 CAGCAGAGACTGATCTTCGCCGGAAAACAGCTCGAAGATG 121576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478534615089040