Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq19402 131 4e-25 seq21007 111 4e-19 seq19642 107 5e-18 seq18862 100 7e-16 >seq19402 Length=197664 Score = 131 bits (144), Expect = 4e-25 Identities = 221/315 (70%), Gaps = 4/315 (1%) Strand=Plus/Minus Query 111570 CAGGGAACTGATCAATTA-CAGAATGTCATTGATCAAATTAAGAACAACCCAACTTCTCG 111628 || ||| ||||||| | |||| ||| ||||| |||| |||||||| || | ||| Sbjct 22840 CAAGGATTTGATCAACTCGCAGA-TGTAATTGACAAAATCAAGAACAATCCTGATGATCG 22782 Query 111629 TCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATG 111688 || ||||| || || ||||| || || | | ||||||||||| ||||| Sbjct 22781 GCGTATTATACTGTCGGCTTGGAATCCTTCTGATCTCAAGTTGATGGCACTTCCTCCATG 22722 Query 111689 TCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGC 111747 ||| | | ||| ||||| ||||| || ||| ||| ||||| ||||||||||||| Sbjct 22721 CCATATGTT-TGCACAGTTCTATGTGGCAGAAGGGGAGCTCTCATGTCAAATGTATCAGC 22663 Query 111748 GATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTT 111807 | || || || || || |||||||| |||||||| ||||| || | || ||||| | Sbjct 22662 GTTCAGCGGACATGGGACTTGGTGTGCCGTTTAACATTGCTTCCTATTCTCTTCTTACGT 22603 Query 111808 GCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATG 111867 || | | |||||||| ||||| || ||||| || || || ||||| || |||| Sbjct 22602 GCATGCTAGCTCATTTGTGCAATCTTGTTCCTGGTGATTTTATCCATGTTATTGGTGATG 22543 Query 111868 CGCATGTTTACACAA 111882 | ||||| |||| || Sbjct 22542 CTCATGTGTACAGAA 22528 >seq21007 Length=954693 Score = 111 bits (122), Expect = 4e-19 Identities = 116/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||||||| ||||| || | | | ||| ||||||||||| | || |||||| Sbjct 134334 ATGGCACTTCCTCCATGCCA-CATGTTTGCGCAGTTTTATGTTGCAAATGGAGAGCTTTC 134392 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 ||| |||||||||||||| || |||||||| ||||||||||| |||||||| ||||| Sbjct 134393 ATGTCAAATGTATCAGCGCTCAGCTGATATGGGTCTTGGTGTACCGTTTAACATTGCCTC 134452 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCA 111820 ||| | || ||||| ||| | | ||||| Sbjct 134453 ATACTCCCTTCTTACATGCATCCTAGCTCA 134482 >seq19642 Length=374925 Score = 107 bits (118), Expect = 5e-18 Identities = 158/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| ||| || || || | ||| ||||| || | |||||| |||| | Sbjct 361885 ATGAAAGATGATAGCATTGAAGGCATATATGAAACACTCAAAGAGTGTGCTGTTATAAGC 361826 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAACAGTTACAT 363740 || ||| || || |||||||| || | || ||| | |||||| | | | |||||||| Sbjct 361825 AAATCTGCTGGAGGTATTGGTGTCTCAGTTCATAATATCCGTGCAACTGGA-AGTTACAT 361767 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| |||||| ||| || ||||| | ||||| ||||| ||||| || || |||| Sbjct 361766 TCGTGGCACAAATGGAACGTCTAATGGTATTGTTCCTATGCTGCGTGTTTTCAACGATAC 361707 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || ||||| || || ||||| ||| | |||||| Sbjct 361706 TGCTCGTTATGTCGATCAAGGAGGAGGCAAGAG-AAAGGG 361668 >seq18862 Length=32547 Score = 100 bits (110), Expect = 7e-16 Identities = 152/213 (71%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 111672 ATGGCACTTCCACCATGTCATCTTATGT-GC-CAGTTTTATGTACACGACGGGATGCTTT 111729 ||||||||||| ||||| ||| |||| || ||||||||||| || || ||| | Sbjct 11861 ATGGCACTTCCTCCATGCCAT---ATGTTGCACAGTTTTATGTGGCAGAAGGAGAGCTCT 11917 Query 111730 CATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAA 111789 |||| |||| ||||||||| || | || || || |||||||| |||||||| ||||| Sbjct 11918 CATGTCAAACGTATCAGCGTTCAGTGGACATGGGACTTGGTGTGCCGTTTAACATTGCTT 11977 Query 111790 GTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCA 111849 ||| | || ||||| || | | ||||| | ||||| || ||||| || | Sbjct 11978 CCTACTCTCTTCTTACGAGCATGCTAGCTCACGTGTGCAATCTTGTTCCTGGTGATTTTA 12037 Query 111850 TTCACGTTATCGGAGATGCGCATGTTTACACAA 111882 | | ||||| || ||||| ||||| |||| || Sbjct 12038 TCCTTGTTATTGGTGATGCTCATGTGTACAGAA 12070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302996954801174