Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq19630 104 2e-17 seq21172 96.9 3e-15 seq18898 91.5 1e-13 seq20422 89.7 4e-13 seq19979 86.0 5e-12 >seq19630 Length=159711 Score = 104 bits (114), Expect = 2e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || | || ||| |||| |||||| || Sbjct 121735 AAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTCGAGGTCGAGTCC 121676 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||||||||| | ||||| ||||| ||||||||||| || ||||| ||| Sbjct 121675 TCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCTCCGGAT 121616 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 || ||||||||||| | || ||| || || |||||||||| Sbjct 121615 CAGCAGAGACTGATCTTCGCCGGAAAACAGCTCGAAGATG 121576 >seq21172 Length=998197 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/144 (76%), Gaps = 3/144 (2%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||||||||| ||||| || ||||||||||| ||||| | | ||| |||||||| ||| Sbjct 271863 GACAAAGAAGGTATACCACCAGATCAACAGAGGCTGATATTTGCCGGTAAGCAACTGGAA 271922 Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| | ||| ||| ||||| ||||| || ||||| ||||| ||||| | || || Sbjct 271923 GATG-GACGAACACTAGCGGATTACAACATCCAGAAAGAGTCTACTCTTCATCTCGTCTT 271981 Query 24203 AAGATTGAGAGGAGG-ACTATAAT 24225 || | ||||| || ||||| || Sbjct 271982 GAGGCTCAGAGGTGGTACTATGAT 272005 >seq18898 Length=1351152 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || || || ||| | || ||| ||||||||||| | Sbjct 748659 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAAACCATCACCCTCGAAGTCGAGAGCTCT 748718 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| |||||| || ||||| || || || || || || Sbjct 748719 GACACCATCGACAACGTCAAAGCAAAGATCCAAGATAAAGAGGGAATCCCACCAGACCAG 748778 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 |||||||| || | | ||| ||||| |||||||| Sbjct 748779 CAGAGACTCATCTTTGCCGGTAAGCAGCTCGAAGA 748813 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | ||||| || | || || |||| |||||| | Sbjct 748431 ATGCAAATATTCGTGAAAACTCTCACTGGCAAGACCATCACTCTCGAGGTCGAGAGCTCT 748490 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| ||||| || ||||| || || Sbjct 748491 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCAG 748550 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 |||||||| || | || ||| ||||| ||||| || Sbjct 748551 CAGAGACTTATCTTCGCCGGGAAGCAGCTCGAGGA 748585 >seq20422 Length=233597 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || ||||| || | || ||| |||| || ||| | Sbjct 131139 ATGCAGATCTTTGTCAAGACCTTGACTGGTAAGACAATAACCCTCGAGGTAGAGAGCTCT 131198 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| || || ||||| || ||||| || || Sbjct 131199 GACACCATCGATAACGTCAAGGCCAAGATACAGGATAAGGAAGGTATTCCTCCAGACCAG 131258 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAG-CGATTATAA 24169 ||| | || || | || || ||||| ||||| |||| | || | || ||| || || Sbjct 131259 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCG-CACTTTAGCCGACTACAA 131317 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||||| || || |||||| |||| || ||||| Sbjct 131318 CATTCAGAAGGAGTCTACACTTCACTTGGTGTT 131350 >seq19979 Length=600886 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || || ||||| | ||||| | || || ||| Sbjct 465109 ATGCAAATCTTTGTCAAGACGTTGACGGGAAAGACCATTACTTTGGAGGTGGAGAGTTCT 465168 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | |||||| ||||| ||||| || ||||| ||||| || || Sbjct 465169 GACACCATTGACAATGTCAAAGCCAAGATCCAAGACAAGGAGGGCATTCCTCCGGACCAG 465228 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | ||| |||||||| ||||||| | | || || || ||| Sbjct 465229 CAGAGGTTGATCTTTGCCGGAAAGCAACTTGAAGATGGGCGTACTCTCGCTGACTACAAC 465288 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||||||| || || || |||| || || || Sbjct 465289 ATTCAAAAGGAGTCGACCCTTCACTTGGTCTT 465320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429824092630335