Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq20422 96.9 3e-15 seq19979 93.3 3e-14 >seq20422 Length=233597 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||| | || ||||||||||| |||||||||||||| Sbjct 130681 CCACCACGGAGCCTGAGAACAAGATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCGGCT 130622 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| |||| || | || ||||| || | || |||| ||| || ||| ||| Sbjct 130621 AAGGTGCGACCGTCTTCGAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGATCCGGAGGG 130562 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||||| || || ||||| ||| || | | | | |||||| | || Sbjct 130561 ATACCCTCTTTATCCTGGATCTTTGC--CTTGACGTTGTCGATGGTGTCGGAGCTTTCAA 130504 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| |||||||| || || || ||||| |||||||| Sbjct 130503 CCTCCAAAGTGATGGTCTTTCCGGTGAGAGTCTTAACAAAGATCTGCAT 130455 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || ||||| || || |||||||||||||| || |||||||| ||| Sbjct 130909 CCACCACGGAGACGCAATACCAAGTGAAGTGTGGACTCCTTTTGGATATTGTAGTCAGCC 130850 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || |||| || | || || || || | || | | ||| |||||| ||| Sbjct 130849 AATGTTCTGCCGTCTTCAAGCTGCTTCCCAGCGAAGATCAATCTCTGCTGGTCCGGAGGG 130790 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || ||||| ||| || | | | | || || | ||| Sbjct 130789 ATACCCTCCTTGTCTTGAATCTTTGC--CTTAACATTGTCGATGGTATCAGAGCTCTCAA 130732 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || |||||||||| || |||||||| |||||||| Sbjct 130731 CCTCCAAAGTGATAGTCTTTCCGGTCAATGTCTTGACAAAGATCTGCAT 130683 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || |||||||||||||| | ||| | ||| Sbjct 131578 AGGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCTAAGGTGCGACCATCC 131519 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || ||| | || || ||||| |||||| ||| | ||| || || || Sbjct 131518 TCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTATCC 131459 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | |||||| | |||| |||| ||||||| Sbjct 131458 TGGATCTTGGC--CTTCACGTTATCAATCGTGTCGGAGCTCTCCACCTCCAGTGTGATGG 131401 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| ||||| || ||||| |||||||| Sbjct 131400 TCTTGCCGGTAAGCGTCTTCACAAAGATCTGCAT 131367 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || ||||| |||||||| || || ||||| |||||| Sbjct 131137 CCTCCACGCAGACGCAACACCAAGTGAAGCGTAGACTCCTTCTGAATATTGTAATCGGCC 131078 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||| | || || || || | || || ||||| || ||| ||| Sbjct 131077 AAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGA 131018 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || || ||| || || | | | | ||||||| | || Sbjct 131017 ATACCCTCTTTGTCCTGGATCTTGGCT--TTAACGTTGTCAATAGTGTCGGAGCTTTCAA 130960 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || ||||| ||||| || |||||||| |||||||| Sbjct 130959 CCTCCAAAGTGATAGTCTTTCCCGTCAGGGTCTTGACAAAGATCTGCAT 130911 >seq19979 Length=600886 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| ||||| | || |||| || || || ||||||||||| |||||||||||||| Sbjct 475201 CCTCCACGTAGACGCAAGACCAAGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCGGCT 475142 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||| | || || || || | || || |||||||||||| ||| Sbjct 475141 AGTGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCCGGAGGG 475082 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || ||| || | | | | |||||| ||| Sbjct 475081 ATGCCTTCCTTGTCCTGGATCTTAGC--CTTGACATTGTCAATGGTGTCGGAACTCTCAA 475024 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || || ||||| || || |||||||| |||||||| Sbjct 475023 CCTCCAGTGTGATCGTCTTACCGGTGAGGGTCTTGACAAAGATCTGCAT 474975 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || |||||||||||||| | ||| | ||| Sbjct 466004 AGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGACCATCC 465945 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || || || || | || || ||||| ||||| ||| | ||| || ||||| Sbjct 465944 TCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCC 465885 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | |||||| | | | | |||||| | |||| |||| |||||||| Sbjct 465884 TGAATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTC 465825 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||||| || || || ||||||||||| Sbjct 465824 TTACCGGTCAAGGTCTTCACGAAAATCTGCAT 465793 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| ||||| | || |||| || || || ||||||||||| ||||||||||| || Sbjct 465335 CCTCCACGTAGACGCAAGACCAAGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGCG 465276 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | || || | ||| || || ||| | || | || ||| |||||| ||| Sbjct 465275 AGAGTACGCCCATCTTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGA 465216 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || ||| || || | | | | ||||| |||| Sbjct 465215 ATGCCCTCCTTGTCTTGGATCTTGGCT--TTGACATTGTCAATGGTGTCAGAACTCTCCA 465158 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || ||||| ||||| |||| ||| |||||||| || ||||| Sbjct 465157 CCTCCAAAGTAATGGTCTTTCCCGTCAACGTCTTGACAAAGATTTGCAT 465109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404982560277430