Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq19979 116 2e-21 seq20422 107 1e-18 seq19364 104 2e-17 seq20655 98.7 7e-16 seq19059 98.7 7e-16 seq18586 98.7 7e-16 seq18898 89.7 3e-13 >seq19979 Length=600886 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||||||||||||||| || |||||| || || ||||| |||| Sbjct 465793 TACCACCACGAAGACGCAACACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCAG 465734 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || || | || || | || ||||| || || || || || || || || | || Sbjct 465733 CCAGTGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGGG 465674 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| |||||| ||| || |||||| || | | || || ||| |||| Sbjct 465673 GAATGCCTTCCTTGTCCTGAATCTTAGCCTTCACGTTATCAATGGTGTCAGAACTCTCAA 465614 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || || || || ||||||||||| || ||||| |||||||| Sbjct 465613 CTTCAAGAGTGATCGTCTTTCCCGTCAAGGTCTTAACGAAAATCTGCAT 465565 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||||||||| ||||| || |||||| || |||||||| |||| Sbjct 474975 TACCACCACGTAGACGCAACACCAAGTGAAGTGTCGACTCCTTCTGGATATTGTAGTCAG 474916 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| | |||| || | || ||||||||||| || | | || ||||| | | Sbjct 474915 CCAAAGTTCTACCGTCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGAG 474856 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| ||||| || || || ||||| | | ||| || ||| || | Sbjct 474855 GGATACCTTCCTTGTCTTGGATCTTGGCTTTGACATTGTCAATAGTGTCAGAACTCTCCA 474796 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || || || || || | || || ||||| |||||||| Sbjct 474795 CCTCCAAAGTGATGGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 474747 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | | |||||| ||||| ||||| || |||||||||||| ||||| || | Sbjct 475203 TACCTCCACGTAGACGCAAGACCAAGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCGG 475144 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | || | || || | || ||||| || || || || || ||||| || | | Sbjct 475143 CTAGTGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCCGGAG 475084 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||| |||||| || || ||| ||||| | | || || ||| |||| Sbjct 475083 GGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCGGAACTCTCAA 475024 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | ||| || || ||||| || | ||| || || || |||||||| Sbjct 475023 CCTCCAGTGTGATCGTCTTACCGGTGAGGGTCTTGACAAAGATCTGCAT 474975 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | | |||||| ||||| ||||| || |||||||||||| ||||| |||| Sbjct 465337 TACCTCCACGTAGACGCAAGACCAAGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAG 465278 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || || | ||| ||||||||||| || | | || || || | | Sbjct 465277 CGAGAGTACGCCCATCTTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAG 465218 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||| || ||||| || || || ||||| | | || || ||| || | Sbjct 465217 GAATGCCCTCCTTGTCTTGGATCTTGGCTTTGACATTGTCAATGGTGTCAGAACTCTCCA 465158 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || ||||| || || |||||||| || || || || || ||||| Sbjct 465157 CCTCCAAAGTAATGGTCTTTCCCGTCAACGTCTTGACAAAGATTTGCAT 465109 >seq20422 Length=233597 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || | || |||||||||||| ||||| || |||||| |||||||||||||| | | Sbjct 131137 CCTCCACGCAGACGCAACACCAAGTGAAGCGTAGACTCCTTCTGAATATTGTAATCGGCC 131078 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| || | || || | || ||||| || || || || || || ||||| | || Sbjct 131077 AAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGA 131018 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || ||||||||| || || || || || | | ||| || |||||||| Sbjct 131017 ATACCCTCTTTGTCCTGGATCTTGGCTTTAACGTTGTCAATAGTGTCGGAGCTTTCAACC 130958 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || ||||| || ||||||| ||| || || || |||||||| Sbjct 130957 TCCAAAGTGATAGTCTTTCCCGTCAGGGTCTTGACAAAGATCTGCAT 130911 >seq19364 Length=374643 Score = 104 bits (114), Expect = 2e-17 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 38099 CAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACG 38158 |||||||| ||||| || ||||| |||||||||||| ||||||||| |||| ||| Sbjct 235625 CAAACGCAGAACCAAGTGGAGAGTCGATTCCTTTTGAATACTGTAATCAGCCAAAGTACG 235684 Query 38159 TTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTC 38218 | | || || | || || |||||||| || || | ||| ||||| | | | ||||| Sbjct 235685 TCCATCTTCAAGCTGCTTACCGGCAAAGATAAGCCTTTGCTGATCCGGAGTAATCCCTTC 235744 Query 38219 TTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGT 38278 |||||| ||| || ||| || || | |||||| || |||||||| || | || Sbjct 235745 CTTGTCCTGAATCTTAGCCTTAACGTTGTCGACAGTGTCGGAGCTTTCAACCTCGAGAGT 235804 Query 38279 AATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || | || || || || ||||||||| Sbjct 235805 CATCGGCTTGCCAGTAAGAGTCTTTACAAAGATCTGCATG 235844 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||||||||| | | ||||| |||||||| |||||||||||| ||||||||| | Sbjct 235845 CCACCTCTCAACCTGAGAACCAAGTGAAGAGTCGACTCCTTTTGAATGCTGTAATCAGCC 235904 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| |||| | || || | || || |||||||| || || | || ||||| || ||| Sbjct 235905 AAAGTACGTCCATCCTCAAGCTGCTTCCCGGCAAAGATGAGTCTCTGCTGATCTGAAGGG 235964 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| || || || || ||| ||||| | | || ||| ||| ||||| Sbjct 235965 ATCCCTTCCTTATCTTGTATCTTGACCTTGACATTATCAATGGTGTCTGAACTCTCAACC 236024 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || | || || || | || || || || || ||||| Sbjct 236025 TCTAGGGTTATGGCCTTCCCAGTAAGAGTCTTTACAAAGATTTGCAT 236071 >seq20655 Length=190867 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||||||||| || ||||| |||||| || ||||||||||| | Sbjct 174443 TACCACCACGGAGACGCAACACCAAGTGGAGAGTCGACTCCTTCTGGATATTGTAATCGG 174502 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| |||| || || || || ||||| || || || | ||| ||||| | | Sbjct 174503 CTAAAGTACGGCCGTCTTCCAACTGCTTACCGGCGAAGATAAGCCTTTGCTGATCCGGAG 174562 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| || ||| ||| || || || || | || || || ||||| | Sbjct 174563 GAATGCCTTCCTTATCCTGAATCTTGGCTTTAACGTTGTCGATCGTGTCAGAGCTTTCCA 174622 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || || | || || ||||| |||||||| Sbjct 174623 CCTCGAGGGTGATCGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 174671 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 ||||||||||||||| || |||| | | ||| | || || | ||| ||||| ||||| Sbjct 174252 CTCCTTTTGAATATTATAGTCAGCAAGAGTACGGCCATCCTCGAGTTGCTTTCCTGCAAA 174311 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || | | ||| || || | |||| || || || || ||| || ||| ||||| Sbjct 174312 GATCAACCTTTGCTGGTCCGGTGGGATTCCCTCCTTATCTTGAATCTTAGCCTTGACATT 174371 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | | ||| || ||| || || || || |||||||| || || ||||| || || || Sbjct 174372 GTCAATAGTGTCAGAACTCTCCACCTCCAAAGTAATAGTCTTTCCGGTCAAAGTCTTGAC 174431 Query 38306 GAATATCTGCAT 38317 ||| |||||||| Sbjct 174432 GAAAATCTGCAT 174443 >seq19059 Length=274371 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||||||||| || ||||| |||||| || ||||||||||| | Sbjct 257947 TACCACCACGGAGACGCAACACCAAGTGGAGAGTCGACTCCTTCTGGATATTGTAATCGG 258006 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| |||| || || || || ||||| || || || | ||| ||||| | | Sbjct 258007 CTAAAGTACGGCCGTCTTCCAACTGCTTACCGGCGAAGATAAGCCTTTGCTGATCCGGAG 258066 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| || ||| ||| || || || || | || || || ||||| | Sbjct 258067 GAATGCCTTCCTTATCCTGAATCTTGGCTTTAACGTTGTCGATCGTGTCAGAGCTTTCCA 258126 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || || | || || ||||| |||||||| Sbjct 258127 CCTCGAGGGTGATCGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 258175 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 ||||||||||||||| || |||| | | ||| | || || | ||| ||||| ||||| Sbjct 257756 CTCCTTTTGAATATTATAGTCAGCAAGAGTACGGCCATCCTCGAGTTGCTTTCCTGCAAA 257815 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || | | ||| || || | |||| || || || || ||| || ||| ||||| Sbjct 257816 GATCAACCTTTGCTGGTCCGGTGGGATTCCCTCCTTATCTTGAATCTTAGCCTTGACATT 257875 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | | ||| || ||| || || || || |||||||| || || ||||| || || || Sbjct 257876 GTCAATAGTGTCAGAACTCTCCACCTCCAAAGTAATAGTCTTTCCGGTCAAAGTCTTGAC 257935 Query 38306 GAATATCTGCAT 38317 ||| |||||||| Sbjct 257936 GAAAATCTGCAT 257947 >seq18586 Length=36132 Score = 98.7 bits (108), Expect = 7e-16 Identities = 77/92 (84%), Gaps = 5/92 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||| || ||||||||| | || || || ||||| Sbjct 25275 AAGCCCGTTCCCTTGGCTGTGGTTTTGCAGGATAGTAGACATGGAAAGTGGGAACCTCGT 25216 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGA 25988 |||||| |||| ||||||||||||||||||| Sbjct 25215 TAATCCACTCATCCGCGTCACTAATTAGATGA 25184 >seq18898 Length=1351152 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||||||||| | || || ||| |||||| |||||||||||||| | Sbjct 748887 TACCACCACGGAGACGCAACACAAGGTGGAGCGTGGACTCCTTCTGAATATTGTAATCCG 748828 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | |||| |||| || | || || |||||||| || || | || || || | | Sbjct 748827 CGAGAGTACGTCCGTCTTCGAGCTGCTTACCGGCAAAGATGAGTCTCTGCTGGTCTGGTG 748768 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || ||||| || || ||| || || || | || || || || || | Sbjct 748767 GGATTCCCTCTTTATCTTGGATCTTTGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCGA 748708 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || || ||||| || ||||| || || || || |||||||| Sbjct 748707 CTTCGAGGGTGATGGTTTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 748659 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||||||||| || |||||| || || |||||||| | Sbjct 749115 TACCACCACGTAGACGAAGAACCAAATGAAGGGTCGACTCCTTCTGGATGTTGTAATCCG 749056 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | || |||| || | || ||||| || || || || | || ||||| | | Sbjct 749055 CAAGCGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGTCTCTGCTGATCTGGTG 748996 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| |||||| ||| || ||| || || | || || || || |||| Sbjct 748995 GGATCCCTTCCTTGTCCTGAATCTTAGCCTTGACGTTATCGATCGTGTCAGAGCTCTCAA 748936 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || |||||||| || || ||||| || || || || |||||||| Sbjct 748935 CCTCCAAAGTAATAGTCTTTCCTGTCAAAGTCTTGACAAAGATCTGCAT 748887 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||||||||||||| |||||| || || |||||||||| || | || | || || Sbjct 749323 ACCAAATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAGAGTCCGACCATCCTCA 749264 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||||| || || || || || | || || || | |||| ||||| ||||| | Sbjct 749263 AGCTGTTTACCAGCGAAGATGAGTCTCTGCTGGTCTGGCGGGATCCCTTCCTTGTCTTGA 749204 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || |||||| || | | || || || ||||| || | ||||| ||||| Sbjct 749203 ATCTTCGCCTTCACGTTGTCAATTGTGTCAGAGCTCTCAACCTCGAGAGTAATGGTTTTT 749144 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||| || ||||| |||||||| Sbjct 749143 CCGGTGAGGGTCTTGACGAAAATCTGCAT 749115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334860017116667