Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq20199 149 8e-31 seq19642 89.7 7e-13 >seq20199 Length=1256174 Score = 149 bits (164), Expect = 8e-31 Identities = 398/595 (67%), Gaps = 10/595 (2%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || |||||||||||||||| || ||||||| || || |||||||| || || | Sbjct 343416 CAGGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATCAACTCGTTGGAGAAAGTCAAC 343475 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 || ||||| || || || || || ||||| || || || ||| | | | || || ||||| Sbjct 343476 CCAGGCATGAGACCTCGTTTCTTGAGCCAGAAGATTGA-GCAGAAGCTGCCTGAGAAGAA 343534 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC-TCCATAACCGGCGCTGTCATGTA 32838 || ||||| || || ||||| | | |||||| | | | | | | | ||| | Sbjct 343535 GATACCTTCGACGCAAGCGAAGGCGACGATTCTCTCAGCGAAAGTCTGAGAT-CCATCGA 343593 Query 32839 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 32898 ||||||| ||||| | ||| || || || ||||| ||||| || || || || Sbjct 343594 TCCACTTCATGGCCCATTGGGCTTTTTTAGCGACGCAAGGGATTGTTTCGATGGCCCGAA 343653 Query 32899 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 32958 |||||| || | | || || | ||||| | || || || | | ||||| ||||| | Sbjct 343654 AGAGATGGTCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGGAGGAGACTGTACATCT 343713 Query 32959 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAG-AAGCATCTAGCCTCGGTAATC 33017 |||| || || || ||||| || || || || |||||| ||||| | || || | | Sbjct 343714 CCGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCA-CGCGCTTCAGAGACT 343772 Query 33018 TGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 33076 || || || | ||| || ||| || | ||| || || ||||||||| || || Sbjct 343773 TGCACATC-GGACATGAACCGTGAAGCGAGATTCTCGAGAACGATTCCGTCAGATGCGGC 343831 Query 33077 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAAT 33135 || || || | || ||||| || || | | || || | ||| || || | ||| | Sbjct 343832 GAAGAAAGCGAGGACGTGTTTGATGAAGTGCCTCTC-TCCGTCGTTGAGATTCTCCCAGT 343890 Query 33136 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 33195 | |||| ||||| ||| |||||||| | ||||| || ||||| || || || | Sbjct 343891 CGCGACCGTCTTGAGATAGATCGACTTCTTCAGCCGTCCAGAAAGATGCTTCGGCTTTCT 343950 Query 33196 TATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGG 33250 | ||||| | |||||| | | | || || ||||| || ||| ||||| | ||| Sbjct 343951 TGTACATCTCCCAGATCTGAGGGTAGTGGATTGGGAACATACAGAATCTGTCTGG 344005 >seq19642 Length=374925 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| ||||| | || | ||| || | || |||| | || ||| |||| |||||| Sbjct 361682 TCCTCCTTGATCGACATAACGAGCAGTATCGTTGAAAACACGCAGCATAGGAACAATACC 361741 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| || || ||||| || || || || |||||| | ||||| |||||| || ||| Sbjct 361742 ATTAGACGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATATTATGAACTGA 361801 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| || || || || ||| || | || || ||| | || ||||| || Sbjct 361802 GACACCAATACCTCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 361861 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 ||| || || |||||||| ||||| | ||||||||||| Sbjct 361862 GCCTTCAATGCTATCATCTTTCATGCAGATCAGAAAACAGCT 361903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633462844017200