Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq17269 590 7e-164 seq20510 549 2e-151 seq19338 390 1e-103 seq19441 86.0 7e-12 >seq17269 Length=4150 Score = 590 bits (654), Expect = 7e-164 Identities = 715/969 (74%), Gaps = 6/969 (1%) Strand=Plus/Plus Query 166081 AACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACC 166140 || |||||||| |||| |||||||| ||||||| || || | ||| | ||||| Sbjct 2769 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 2828 Query 166141 ATCTGTTTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGAG 166200 | ||| || |||| ||| | || || ||||| || ||||| ||||| || ||||| Sbjct 2829 TCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 2888 Query 166201 CCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCC--CT 166258 || || | || ||||| | || || ||||| || || || ||||| || | || || Sbjct 2889 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACT 2948 Query 166259 CCTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAAT 166318 || || || |||||| | || || || || ||||||||||| ||||| ||||||||| Sbjct 2949 TCTGCA--GCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAAT 3006 Query 166319 GGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTATG 166378 |||| || || |||||||||| | || | || | ||||| | | || | | Sbjct 3007 GGCTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTT 3066 Query 166379 CCTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCG 166438 || ||||||||||| |||||| | || ||| || |||||||||||||||||| | Sbjct 3067 GTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTG 3126 Query 166439 TAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTC 166498 | ||||| || || ||||||||||| || | || || ||| || |||| || | |||| Sbjct 3127 TTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTC 3186 Query 166499 AAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTG 166558 |||| ||| ||||| | ||||| || || ||| ||| || ||||||| ||| ||| Sbjct 3187 AAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTG 3246 Query 166559 TCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTG 166618 | ||||| || ||||||||||| || |||||||| || || ||| | |||||||| |||| Sbjct 3247 TATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 3306 Query 166619 TATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCG-TC 166677 ||||||| || || || || || |||||||| | || ||||| | | | | || Sbjct 3307 TATTCGGCGGCTCCCTATTTAGTGCTATGCACGGTTCCTTGGTAACTTC-TAGTTTGATC 3365 Query 166678 CGTGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAG 166737 | || ||||| |||| ||| ||| || | ||||||| || |||||||||||||| Sbjct 3366 AGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAA 3425 Query 166738 ACCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCC 166797 || |||||||| || |||||||| ||||| || || || ||||||||||||| ||| Sbjct 3426 ACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGT 3485 Query 166798 TTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGG 166857 |||||||| ||||| || | || |||||| | || || ||||| || || ||||| ||| Sbjct 3486 TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 3545 Query 166858 TTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAG 166917 ||||||||| | ||| |||| || ||||| |||||||| || |||||||| |||||||| Sbjct 3546 TTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 3605 Query 166918 TCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCT 166977 || | | ||| |||| || ||||| | || |||||||| ||| | | ||||||||| Sbjct 3606 TCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCT 3665 Query 166978 GGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGCT 167037 || ||||||||||| ||||| || |||||||||||||||||||| || || || ||| Sbjct 3666 AACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCGCTAGACCTAGCT 3725 Query 167038 GCTGCTGAG 167046 |||| |||| Sbjct 3726 GCTGTTGAG 3734 >seq20510 Length=252746 Score = 549 bits (608), Expect = 2e-151 Identities = 732/1016 (72%), Gaps = 6/1016 (1%) Strand=Plus/Plus Query 167300 TTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 167359 |||||| | ||||||||||| | | |||||||| || ||||| || |||||||| Sbjct 62277 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 62336 Query 167360 TTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 167419 || | || ||||| ||| ||| | || | || || ||| | || || || || ||| Sbjct 62337 CTATTGCTCTTTCCGTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 62396 Query 167420 GTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACCTT---GAGGGTGCTAATTTT 167476 || || |||||||| || || ||||| ||||| | | || ||| |||||| Sbjct 62397 GTAACTTCATGGTATACTCATGGATTGGC---TAGTTCCTATTTAGAAGGTTGCAATTTT 62453 Query 167477 CTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGG 167536 | || || ||||| || ||||||||| | | | | |||||| | | |||| ||| Sbjct 62454 TTAACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGG 62513 Query 167537 GGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTTT 167596 |||||||| | || || ||||| | | ||||| || | || || || ||||||||| Sbjct 62514 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTT 62573 Query 167597 GTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAGT 167656 || || |||||||| || || || | ||||| |||||| | || |||||||| | | Sbjct 62574 GTTGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCT 62633 Query 167657 AGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTT 167716 || || | || ||||| ||||| || || || |||||||| |||||||| ||| Sbjct 62634 CGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTT 62693 Query 167717 GTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTT 167776 || ||||| ||||| || ||||| || || || || ||||||||||||| || ||| Sbjct 62694 GTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTT 62753 Query 167777 GGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTC 167836 ||||| || || |||||| ||||| | || || | || || || ||||| ||||| | Sbjct 62754 GGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACATTG 62813 Query 167837 AACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATC 167896 ||||| || |||||||||||||| || ||| | || |||| || |||| | || || Sbjct 62814 AACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATT 62873 Query 167897 CATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAA 167956 ||||||| ||| ||||| |||||| | | |||||||||||| ||||| || ||| Sbjct 62874 CATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGT 62933 Query 167957 GCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGG 168016 || ||| | | ||||| | || ||||||||||| |||||||| |||||||| || ||| Sbjct 62934 GCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 62993 Query 168017 TCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTC 168076 || ||||| ||||| ||||||| |||||| |||||||| || ||||||||| | || Sbjct 62994 TCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 63053 Query 168077 GTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTT 168136 || || || | || | |||| ||| || |||| | ||||||| || | || || Sbjct 63054 GTACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTA 63113 Query 168137 CGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACT 168196 ||||| |||||||| || || |||||| | | ||||| || ||||| || ||||| ||| Sbjct 63114 CGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACT 63173 Query 168197 TTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGAC 168256 |||||||| ||||| || || | || ||||| | || || |||||||| | ||| Sbjct 63174 TTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGAT 63233 Query 168257 CAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 || || ||||||||| || ||||||| || || || | ||| | || |||||||| Sbjct 63234 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 63289 Score = 181 bits (200), Expect = 1e-40 Identities = 159/198 (80%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 166849 GGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAAC 166908 ||||| |||||||||||| | ||| |||| || ||||| |||||||| || |||||||| Sbjct 30762 GGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAAT 30703 Query 166909 TTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTC 166968 |||||||| || || | ||| |||| || ||||| | || |||||||| ||| | | Sbjct 30702 TTCAACCAATCAGTCGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATT 30643 Query 166969 AACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTG 167028 ||||||||| || ||||||||||| ||||| || |||||||||||||||||||| || Sbjct 30642 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCGCTA 30583 Query 167029 GATCTTGCTGCTGCTGAG 167046 || || ||||||| |||| Sbjct 30582 GACCTAGCTGCTGTTGAG 30565 >seq19338 Length=76300 Score = 390 bits (432), Expect = 1e-103 Identities = 600/852 (70%), Gaps = 3/852 (0%) Strand=Plus/Plus Query 167462 GAGGGTGCTAATTTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCT 167521 || ||| | |||||| | || || ||||| | ||||||||| | | | | |||||| Sbjct 38317 GAAGGTTCCAATTTTTTAACTGCTGCAGTTTTTACTCCTGCTAATATTTTAGCGCATTCT 38376 Query 167522 CTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGG 167581 | | |||| ||||||||||| | || || ||||| | | ||||| || | || Sbjct 38377 TTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGC 38436 Query 167582 GGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTT-ATGCTTCG 167640 || | || | || ||| || ||||||| || || || | ||||| ||| ||| | || Sbjct 38437 GGTATGTGCGATTATGTTGCTGTCCACGGTGCTTTCGCATTAATAGGTTTTTATGTTACG 38496 Query 167641 GCAATTTGAGATAAGTAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGG 167700 |||||||| | | || || | || ||||| ||||| || || || ||||| Sbjct 38497 TCAATTTGAACTTGCTCGATCCGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGG 38556 Query 167701 TCCGATTGCTGTCTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTT 167760 ||| |||||||| ||||| ||| | ||||| || ||||| || || || || ||||||| Sbjct 38557 TCCAATTGCTGTTTTTGTTTCTTTCTTTCTAATGTATCCACTAGGTCAATCTGGTTGGTT 38616 Query 167761 CTTTGCACCGTCGTTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTT 167820 |||||| || |||||||| || || ||||| ||||| | || || | || || || Sbjct 38617 CTTTGCGCCTAGTTTTGGTGTAGCGGCTTTATTTCGATTCATCCTCTTTTTCCAAGGGTT 38676 Query 167821 CCATAACTGGACGCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGC 167880 ||||| ||||| | ||||| || |||||||||||||| || ||| | || | || || Sbjct 38677 TCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGACGCGGC 38736 Query 167881 ATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCA 167940 |||| | || || ||||||| ||| ||| | |||||| | | | |||||||||| Sbjct 38737 TCTGCTATGCGCTATTCATGGTGCTACTGTAAA-AATACTTTATTTAAAGATGGTGATGG 38795 Query 167941 AGCAAACACTTTCAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCAC 168000 ||||| || ||| | ||| | | ||||| | ||| ||||||||||| |||||||| Sbjct 38796 TGCAAATACATTCCGTACTTTTAACCCAACTCAAGCAGAAGAAACTTATTCAATGGTCAC 38855 Query 168001 TGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCA 168060 ||||||| || ||||| ||||| ||||| |||||| ||||||| |||||| || Sbjct 38856 CGCTAACCACTTTTGGTCACAAATCTTTGGGGCTGCTTTTTCCAATAAGTGTTGGTAACA 38915 Query 168061 CTTCTTTATGCTTTTCGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGG 168120 | ||||||| | || || || || || | | || ||| || |||| | |||| Sbjct 38916 TTCCTTTATGTTATTTGTACCGGTACCAGGTTTATTGATGAGTGCTCTTGGAGTAGTCGG 38975 Query 168121 TCTCGCACTTAATCTTCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGA 168180 ||| || | || || | | | |||||||| || || |||||| || | ||||| || || Sbjct 38976 TCTAGCTTTGAACCTACATCCCTATGACTTCGTTTCCCAGGAAATTCGTGCAGCGGAAGA 39035 Query 168181 TCCAGAGTTTGAAACTTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTG 168240 ||| || ||||| ||||||||||| |||| || || | || ||||| | || || || Sbjct 39036 TCCGGAATTTGAGACTTTCTATAC-TAAAATATTCTTTTAAACGAAGGTATTCGCGCTTG 39094 Query 168241 GATGGCTCCAGTAGACCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAG 168300 ||| || | ||| || || ||||||||| || ||||||| || || || | ||| | Sbjct 39095 GATTGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACG 39154 Query 168301 AGGCAACGCTCT 168312 | |||||||| Sbjct 39155 TGAAAACGCTCT 39166 >seq19441 Length=80586 Score = 86.0 bits (94), Expect = 7e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 167687 ATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGA 167746 || || || ||||||| |||||||| ||||| ||||| ||||| || ||||| || || Sbjct 18201 ATCGCATTCTCTGGTCTAATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGT 18260 Query 167747 CAGTCCAGTTGGTTCTTTGCACCGTCG-TTTGGTGTTGCAGCGATATTTAGATTCCTACT 167805 || || ||||||||||||| ||| | |||||||| || | |||||| | || | || Sbjct 18261 CAATCTGGTTGGTTCTTTGC-GCGTAGTTTTGGTGTAGCGACTATATTTCGTATCATCCT 18319 Query 167806 ATTCCTACAGGGTTTCCATAA 167826 || | || || || ||||| Sbjct 18320 CTTTTTCCAAGGGTTTCATAA 18340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567080570327200