Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq20199 219 5e-52 seq20777 95.1 1e-14 seq18863 95.1 1e-14 seq18492 95.1 1e-14 seq18710 93.3 5e-14 seq18733 91.5 2e-13 seq19604 86.0 7e-12 seq21172 84.2 2e-11 seq20711 84.2 2e-11 seq20445 84.2 2e-11 seq19441 84.2 2e-11 seq19056 84.2 2e-11 seq18061 84.2 2e-11 seq19630 82.4 8e-11 seq19513 82.4 8e-11 >seq20199 Length=1256174 Score = 219 bits (242), Expect = 5e-52 Identities = 410/592 (69%), Gaps = 9/592 (2%) Strand=Plus/Plus Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140 |||| || | ||| || || ||| ||||| |||||||||||||| |||||||| ||| Sbjct 343405 TGTAGATAAGGCAGGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATCAACTCGTTGG 343464 Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTA 93199 ||| || || || || | || ||||||||||||||||| || |||| |||| || || Sbjct 343465 AGAAAGTCAACCCAGGCATGAGACCTCGTTTCTTGAGCCAGAAGATTG-AGCAGAAGCTG 343523 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259 || || || || |||||||| ||| || || || || || | || || ||| | | Sbjct 343524 CCTGAGAAGAAGATACCTTCGACGCAAGCGAAGGCGACGATTCTCTCAGCGAAAGT--CT 343581 Query 93260 GAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT 93319 || | | | |||||| || | ||||| | ||||||||| | ||||| | |||| Sbjct 343582 GAGATCCATC-GATCCACTTCATGGCCCATTGGGCTTTTTTAGCGACGCAAGGGATTGTT 343640 Query 93320 TCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAAC 93379 ||||| || ||| || | |||| ||| | ||| ||||| || |||| | Sbjct 343641 TCGATGGCCCGAAAGAGATGGTCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGGAGG 343700 Query 93380 AGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA 93439 ||| ||||| || || |||| |||||| || || || ||||| ||||||||| | Sbjct 343701 AGACTGTACATCTCCGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGC 343760 Query 93440 GCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTA-CGAGATTTTCATTGACTATACC 93498 ||||| | || ||||| || || | | | | | ||||||| || || || || Sbjct 343761 GCTTCAGAGACTTGCACATC-GGACATGAACCGTGAAGCGAGATTCTCGAGAACGATTCC 343819 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558 || ||||| || || ||||| | | || || || || || |||| | || || || Sbjct 343820 GTCAGATGCGGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGCCTCTCTCCGTCGTTGAG 343879 Query 93559 CTTATCCCAATCG-GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617 || ||||| ||| || | |||| || |||||||||||||| | ||||| || |||| Sbjct 343880 ATTCTCCCAGTCGCGACCG-TCTTGAGATAGATCGACTTCTTCAGCCGTCCAGAAAGATG 343938 Query 93618 CTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 |||| ||||| |||||||| ||||| || | | || || ||||| || || Sbjct 343939 CTTCGGCTTTCTTGTACATCTCCCAGATCTGAGGGTAGTGGATTGGGAACAT 343990 >seq20777 Length=230431 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/106 (81%), Gaps = 8/106 (8%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 15243 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 15186 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||||| |||||||| ||||| ||||||||| |||||| Sbjct 15185 GCGTGGGTTCAAACCCCACTTCTGAC--ATTATTATTTTTATTTTT 15142 >seq18863 Length=342835 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/94 (83%), Gaps = 6/94 (6%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| ||||| |||||| | ||| || Sbjct 151736 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGTTCTGGT--CTTCGAGAGAAG 151793 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||| |||||||| ||||||| || || Sbjct 151794 GCGTGGGTTCAAACCCCACTTCTGACAATTTGTT 151827 >seq18492 Length=293640 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/108 (81%), Gaps = 9/108 (8%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 166681 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 166624 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGT 126368 |||||||||| || ||||| ||||| ||||||| ||| ||||||| Sbjct 166623 GCGTGGGTTCAAATCCCACTTCTGAC-AATTATTTTTG--TTTTTTGT 166579 >seq18710 Length=168764 Score = 93.3 bits (102), Expect = 5e-14 Identities = 74/88 (84%), Gaps = 6/88 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| ||||| |||||| | ||| || Sbjct 26888 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGTTCTGGT--CTTCGAGAGAAG 26945 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| |||||||| ||||||| Sbjct 26946 GCGTGGGTTCAAACCCCACTTCTGACAA 26973 >seq18733 Length=396924 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/92 (83%), Gaps = 6/92 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||| ||||||||||| | ||| |||||| |||| | | Sbjct 89933 AGTCAGGATGGCCGAGTGGTCCAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 89990 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTA 126352 |||||||||| |||||||| ||||||||||| Sbjct 89991 GCGTGGGTTCAAACCCCACTTCTGACAAATTA 90022 >seq19604 Length=1120120 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGA 126320 ||||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | Sbjct 664976 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGG 664917 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||| || ||||| ||||||| || || Sbjct 664916 GCGTGGGTTCAAATCCCACTTCTGACAATTTTTT 664883 >seq21172 Length=998197 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/95 (80%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 21690 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 21749 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| || ||||| |||||| ||| || || Sbjct 21750 GTGGGTTCAAATCCCACTTCTGACATATTTTTTTT 21784 >seq20711 Length=256722 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 222972 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 222915 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 222914 GCGTGGGTTCAAATCCCACTTCTGACAA 222887 >seq20445 Length=115907 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/111 (78%), Gaps = 10/111 (9%) Strand=Plus/Plus Query 126254 CTTCTATTT---ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT 126310 |||| |||| | ||||||| ||||||||||||||||||||||||| | ||| |||||| Sbjct 92336 CTTCAATTTCAAAAAGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT 92395 Query 126311 TCCCTC----GGGAGCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||| | | |||||||||| || ||||| ||||| | ||||| || Sbjct 92396 --CCTCGTAAGAGGGCGTGGGTTCAAATCCCACTTCTGAC-ATTTATTTTT 92443 >seq19441 Length=80586 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/83 (83%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 3436 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 3379 Query 126328 TTCGAACCCCACACCTGACAAAT 126350 ||| || |||||| ||| ||||| Sbjct 3378 TTCAAATCCCACAGCTGTCAAAT 3356 >seq19056 Length=433554 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/105 (79%), Gaps = 7/105 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 387994 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 387937 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||| || |||||| ||| ||| ||| ||| |||||||| Sbjct 387936 GGGTTCAAATCCCACAGCTGTCAA--TATCATT---TTTTTTGTT 387897 >seq18061 Length=9344 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/93 (81%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 5491 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 5548 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||| || |||||| ||| ||| || || || Sbjct 5549 GGGTTCAAATCCCACAGCTGTCAATTTTTTTTT 5581 >seq19630 Length=159711 Score = 82.4 bits (90), Expect = 8e-11 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 128272 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 128215 Query 126328 TTCGAACCCCACACCTGACAA--ATTATTATTGGAATTTTT 126366 ||| || |||||| ||| ||| ||| | ||| | ||||| Sbjct 128214 TTCAAATCCCACAGCTGTCAATCATTTTAATTTTATTTTTT 128174 >seq19513 Length=568080 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/96 (80%), Gaps = 8/96 (8%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 233815 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGGG 233872 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||| || ||||| ||||| |||||| || Sbjct 233873 CGTGGGTTCAAATCCCACTTCTGAC--ATTATTTTT 233906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556712139048680