Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq20655 89.7 4e-13 seq19059 89.7 4e-13 >seq20655 Length=190867 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| ||||||||||| ||| |||| || || || ||||| |||| ||| | Sbjct 174215 ATGCAGATTTTTGTCAAGACGTTGACGGGAAAGACTATTACTTTGGAGGTGGAGAGCTCT 174156 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || ||| || ||| ||||| || || |||| ||||| Sbjct 174155 GATACGATTGATAATGTGAAAGCGAAGATTCAAGACAAGGAGGGTATTCCTCCGGATCAG 174096 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||| | || | ||| || || || | |||||| || |||| |||| || ||||| Sbjct 174095 CAGAGGTTGATCTTTGCTGGAAAGCAGCTTGAAGATGGTAGAACTTTGGCTGACTATAAC 174036 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || || || || ||||| || || || |||||||| || || |||| Sbjct 174035 ATCCAGAAGGAGTCAACACTTCACTTGGTCTTGCGTCTCCGTGGAGGCA 173987 >seq19059 Length=274371 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| ||||||||||| ||| |||| || || || ||||| |||| ||| | Sbjct 257719 ATGCAGATTTTTGTCAAGACGTTGACGGGAAAGACTATTACTTTGGAGGTGGAGAGCTCT 257660 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || ||| || ||| ||||| || || |||| ||||| Sbjct 257659 GATACGATTGATAATGTGAAAGCGAAGATTCAAGACAAGGAGGGTATTCCTCCGGATCAG 257600 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||| | || | ||| || || || | |||||| || |||| |||| || ||||| Sbjct 257599 CAGAGGTTGATCTTTGCTGGAAAGCAGCTTGAAGATGGTAGAACTTTGGCTGACTATAAC 257540 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || || || || ||||| || || || |||||||| || || |||| Sbjct 257539 ATCCAGAAGGAGTCAACACTTCACTTGGTCTTGCGTCTCCGTGGAGGCA 257491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422929887579400