Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq20199 132 1e-25 seq19918 96.9 7e-15 seq20368 91.5 3e-13 seq21195 87.8 4e-12 seq20806 87.8 4e-12 seq19925 87.8 4e-12 seq19847 87.8 4e-12 seq19135 87.8 4e-12 seq18616 87.8 4e-12 seq18577 87.8 4e-12 seq18376 87.8 4e-12 seq18224 87.8 4e-12 seq21028 86.0 1e-11 seq20876 86.0 1e-11 seq19502 86.0 1e-11 seq19604 84.2 4e-11 >seq20199 Length=1256174 Score = 132 bits (146), Expect = 1e-25 Identities = 550/852 (65%), Gaps = 23/852 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | || |||| || ||||||| |||||| | || || || || Sbjct 343149 TCAAAGAAGTTTGTTTTCCCCTGAAGCGAGATTAACTCCATCCAATCAAACGGATTCACC 343208 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || |||| ||| | ||||| || | || | | || ||||||||||| | | Sbjct 343209 ACACCGTACACCTTACCGTACCCAAGCGCACCCAAAAGCCTATCCGCCACAAACTCGATA 343268 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA-CAAGGAATTGCCTCACAGAT 251741 ||||| | ||||| ||| |||||| |||| || ||| ||||||| || || || | Sbjct 343269 TACTGACTCATCAACTCACGGTTCATCCCAACCA-ACGCGCAAGGAAGCGCGTCGCACAC 343327 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 || ||| | ||| | |||| || || ||||| | |||||| | || || || Sbjct 343328 AAACTCCCTCTCGATCTCAACCGCGTCACATACAATCGACTTCACGCGCTCCTCCGAGAG 343387 Query 251802 CTT-GTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGC 251860 ||| || ||| || | ||| | || | | || | ||| | || ||||| | Sbjct 343388 CTTCGTCCTCAAGAGC-GTGTAGATAAGGCAGGCGAAATCGCAGTGTAAGCCTTCGTCTC 343446 Query 251861 GACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGA 251920 | ||| ||||||||||| | | || |||||||| | || || ||| ||||||||| Sbjct 343447 GTGAGATCAACTCGTTGGAGAAAGTCAACCCAGGCATGAGACCTCGTTTCTTGAGCCAGA 343506 Query 251921 AGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGC 251980 |||||| ||| ||| || ||||| | | ||| ||||| || | | || || | | Sbjct 343507 AGATTGAGCAGAAGCTGCCTGAGAAGAAGATACCTTCGACGCAAGCGAAGGCGACGATTC 343566 Query 251981 GCTCAGCAAACGACT--TGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTTTCC 252038 |||||| || | || ||| || | ||||| |||||| || || || | Sbjct 343567 TCTCAGCGAAAGTCTGAGATCCATCG--ATCCACTTCATGGCCCATTGGGCTTTTTTAGC 343624 Query 252039 AACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGAT 252098 || |||||||||||||| || ||||||| || | ||| | ||| | ||| Sbjct 343625 GACGCAAGGGATTGTTTCGATGGCCCGAAAGAGATGGTCTCTCTCTTTGTTGTCTTTGAT 343684 Query 252099 GAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAAC---ATCTG 252155 | | || || |||||| |||||||||||| ||||| |||| | | | ||||| Sbjct 343685 GTAAGTGTCGAGGAGGAGACTGTACATCTCCGAGTGGAT--ATTC-TCAATCGCGATCTG 343741 Query 252156 GTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCG--TGGAAAAGTTGTTTGCA 252213 | | | ||||| |||||| || | | || || | ||| || || Sbjct 343742 GAACCCGTAGAAAGCACGCGCTTCAGAGACTTGCACATCGGACATGAACCGT--GAAGCG 343799 Query 252214 ATGTTCTCCATCACCATGCCATC-GCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAA 252272 | ||||| | || || || || | || | || ||||| | || | | |||||||| Sbjct 343800 AGATTCTCGAGAACGATTCCGTCAGATG-CGGCGAAGAAAGCGAGGACGTGTTTGATGAA 343858 Query 252273 GTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAAC 252332 ||| | ||| |||||||||| || || ||||||| | ||| ||| ||| || Sbjct 343859 GTGCCTCTCTCCGTCGTTGAGATTCTC---CCAGTCGCGACCGTCTTGAGATAGATCGAC 343915 Query 252333 TTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCGAACACATCAGGGTA 252392 |||||| |||||||||| | | | || ||||||||||| | | | | |||||| Sbjct 343916 TTCTTCAGCCGTCCAGAAAGATGCTTCGGCTTTCTTGTACATCTCCCAGATCTGAGGGTA 343975 Query 252393 CTTGATTGGGAA 252404 | ||||||||| Sbjct 343976 GTGGATTGGGAA 343987 >seq19918 Length=1092916 Score = 96.9 bits (106), Expect = 7e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCA 218628 || ||||| | |||| ||||| ||||| || ||| | ||||| || ||| | Sbjct 600643 TCAATTCCTTCCATGGTTGATGGGCTCAAACCCGGTCAGAGAAAGATACTGTTTTGTTCG 600702 Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688 || ||| |||| | | | || ||||| | ||||| ||||||||||| || || Sbjct 600703 TTTAAGAGGAATTTAATCAAGGAGGCCAAGGTTTCCCAGTTATCTGGTTATGTGTCAGAG 600762 Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAG 218748 || | || ||||| || ||||||||||| || | || | || ||||| ||| Sbjct 600763 CACTCGGCTTATCATCATGGCGAGCAGAGTCTTGCCAGTACTATCATTGGAATGGCGCAG 600822 Query 218749 GACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGG 218801 |||||||| || || |||||||| ||| |||| || || || ||||| ||||| Sbjct 600823 GACTATGTTGGGAGCAACAACATTAACCTGCTTCTACCAAATGGTCAATTTGG 600875 >seq20368 Length=285265 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 ||| |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||| Sbjct 145753 AGAAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 145812 Query 142559 CGAGCCCCAC 142568 |||||||||| Sbjct 145813 CGAGCCCCAC 145822 >seq21195 Length=1746141 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1701301 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1701242 Query 142563 CCCCAC 142568 |||||| Sbjct 1701241 CCCCAC 1701236 >seq20806 Length=601847 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 534437 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 534378 Query 142563 CCCCAC 142568 |||||| Sbjct 534377 CCCCAC 534372 >seq19925 Length=266983 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 241992 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 242051 Query 142563 CCCCAC 142568 |||||| Sbjct 242052 CCCCAC 242057 >seq19847 Length=336592 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 194290 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 194231 Query 142563 CCCCAC 142568 |||||| Sbjct 194230 CCCCAC 194225 >seq19135 Length=1448613 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 369699 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 369758 Query 142563 CCCCAC 142568 |||||| Sbjct 369759 CCCCAC 369764 >seq18616 Length=1290245 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 488219 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 488160 Query 142563 CCCCAC 142568 |||||| Sbjct 488159 CCCCAC 488154 >seq18577 Length=181797 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 19617 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 19676 Query 142563 CCCCAC 142568 |||||| Sbjct 19677 CCCCAC 19682 >seq18376 Length=473425 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 43254 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 43195 Query 142563 CCCCAC 142568 |||||| Sbjct 43194 CCCCAC 43189 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 78284 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 78343 Query 142563 CCCCAC 142568 |||||| Sbjct 78344 CCCCAC 78349 >seq18224 Length=14928 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 9714 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 9655 Query 142563 CCCCAC 142568 |||||| Sbjct 9654 CCCCAC 9649 >seq21028 Length=1343725 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 1335513 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1335454 Query 142564 CCCAC 142568 ||||| Sbjct 1335453 CCCAC 1335449 >seq20876 Length=522711 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 129226 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 129285 Query 142564 CCCAC 142568 ||||| Sbjct 129286 CCCAC 129290 >seq19502 Length=708233 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 696081 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 696022 Query 142564 CCCAC 142568 ||||| Sbjct 696021 CCCAC 696017 >seq19604 Length=1120120 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||| ||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 588266 AGCCCGTCTAGTTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 588207 Query 142563 CCCCAC 142568 |||||| Sbjct 588206 CCCCAC 588201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027555546271237