Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq20422 89.7 4e-13 seq19979 84.2 2e-11 >seq20422 Length=233597 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||||||| | ||| | || ||| | || ||||| ||||| || || || || Sbjct 131004 GACAAAGAGGGTATTCCTCCGGATCAGCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAG 131063 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| ||| ||||||||||||||||||||||||| ||||| ||||| |||| || Sbjct 131064 GATGGTCGCACTTTGGCCGATTACAATATTCAGAAGGAGTCTACGCTTCACTTGGTGTTG 131123 Query 22047 CGTTTACGAGGAGG 22060 ||| | || ||||| Sbjct 131124 CGTCTGCGTGGAGG 131137 >seq19979 Length=600886 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||| ||||| | ||| | || ||||| |||||||||||||| || || | ||| Sbjct 464746 GATAAGGAGGGCATTCCTCCGGATCAGCAGAGGCTTATCTTTGCTGGAAAGCAGTTGGAA 464805 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGT 22042 || ||| ||||||||||||| || ||||||||||||||||| ||| |||| Sbjct 464806 GACGGCCGTACTTTGGCCGATTACAACATCCAGAAGGAATCTACTCTCCATTTGGT 464861 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||||| |||||||| || || || || | |||||| | ||| ||||||||||| Sbjct 474408 CAGCAGAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGATGGACGTACTTTGGCCGATTAC 474467 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||||| ||||||||||||||||| || |||| ||| Sbjct 474468 AATATCCAGAAGGAATCTACTCTCCACTTGGTCTTA 474503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358031584255378