Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq20199 159 7e-34 >seq20199 Length=1256174 Score = 159 bits (176), Expect = 7e-34 Identities = 362/538 (67%), Gaps = 10/538 (2%) Strand=Plus/Minus Query 42408 TTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTG 42467 ||| ||||| || | || || ||||||||||| |||||||| || || ||||| || Sbjct 343858 TTCATCAAACACGTCCTCGCTTTCTTCGCCGCATCTGACGGAATCGTTCTCGAGAATCTC 343799 Query 42468 GCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCA 42526 || | |||||||| || ||||| || ||| ||||| ||| |||||||| ||||| Sbjct 343798 GCTTCACGGTTCATGTCCGATGTGCAAGTCTCTGAAGCGCG-TGCTTTCTACGGGTTCCA 343740 Query 42527 GATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCT 42586 ||| || || ||||| | ||||| ||| ||||| || ||| |||| |||||| Sbjct 343739 GATCGCGATTGAGAATATCCACTCGGAGATGTACAGTCTCCTCCTCGACACTTACATCAA 343680 Query 42587 GGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAA 42646 || | ||| | || || || |||||| || || || || ||| || || Sbjct 343679 AGACAACAAAGAGAGAGACCATCTCTTTCGGGCCATCGAAACAATCCCTTGCGTCGCTAA 343620 Query 42647 GAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCT 42706 || || | ||||| | || |||||||| | | | || |||| ||||| | Sbjct 343619 AAAAGCCCAATGGGCCATGAAGTGGATCGATGGATCTCA---GACTTTCGCTGAGAGAAT 343563 Query 42707 GGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTG 42766 || ||||| | |||||| || ||||||||||| ||| |||| ||| |||||||| Sbjct 343562 CGTCGCCTTCGCTTGCGTCGAAGGTATCTTCTTCTCAGGCAGCTTCTGCTCAATCTTCTG 343503 Query 42767 GCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGG 42825 ||||||| | |||| || ||||| || | || ||||| ||||| | ||| | | Sbjct 343502 GCTCAAGAAACGAGGTCTC-ATGCCTGGGTTGACTTTCTCCAACGAGTTGATCTCACGAG 343444 Query 42826 ACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGC 42885 |||| || | || | || || |||||||| | | | || | | | ||| |||| Sbjct 343443 ACGAAGGCTTACACTGCGATTTCGCCTGCCTTATCTACACG---CTCTTGAGGACGAAGC 343387 Query 42886 CCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 |||| ||||||| || | | || | || || || |||||||||| |||||| Sbjct 343386 TCTCGGAGGAGCGCGTGAAGTCGATTGTATGTGACGCGGTTGAGATCGAGAGGGAGTT 343329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944087096846320