Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq21007 102 7e-17 seq19402 102 7e-17 >seq21007 Length=954693 Score = 102 bits (112), Expect = 7e-17 Identities = 190/275 (69%), Gaps = 8/275 (3%) Strand=Plus/Minus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 || ||||| || || | || | ||||| || |||||||||||| || || || | | Sbjct 134485 ACGTGAGCTAGGATGCATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCAAGA 134426 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 ||||| || | || | |||||||| ||||| |||||||| || | || |||||||| Sbjct 134425 CCCATATCAGCTGAGCGCTGATACATTTGACATGAAAGCTCTCCATTTGCAACATAAAAC 134366 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 || |||| ||| || || ||||| ||||||| | | ||| | || ||||| || Sbjct 134365 TGCGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAGCC 134306 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATCCACAATGTACGA 20481 |||| || || | || ||| | ||||| || || || | ||| || || || | Sbjct 134305 GACATTATTATCCGTCGATCATCAGGATTGTTCTTGATCTTGTTAAT-TAC-ATCTA--A 134250 Query 20482 CAATTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 | || ||||| || ||| | ||||| ||||||| Sbjct 134249 GAGCTGATCAAATCCTTGGTCAGTATAATCAGCAT 134215 >seq19402 Length=197664 Score = 102 bits (112), Expect = 7e-17 Identities = 184/269 (68%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 20248 ATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACC 20307 |||||| ||||| | || | || |||||| ||||||||||| || || || | || Sbjct 22589 ATGAGCTAGCATGCACGTAAGAAGAGAATAGGAAGCAATGTTAAACGGCACACCAAGTCC 22648 Query 20308 CATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTG 20367 |||||| | || | |||||||| ||||| || ||||| || || || ||||| || || Sbjct 22649 CATGTCCGCTGAACGCTGATACATTTGACATGAGAGCTCCCCTTCTGCCACATAGAACTG 22708 Query 20368 ACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACA 20427 |||| || || || ||||| ||||||||| | || | || ||||| || | Sbjct 22709 TGCAAACATATGGCATGGAGGAAGTGCCATCAACTTGAGATCAGAAGGATTCCAAGCCGA 22768 Query 20428 CATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTG 20487 || || || | | ||| | ||||| || || ||| || | | | | | ||| Sbjct 22769 CAGTATAATACGCCGATCATCAGGATTGTTCTTGATTTTGTCAATTACATCTGCGAGTTG 22828 Query 20488 GTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 ||||| || ||||| ||||| ||||||| Sbjct 22829 ATCAAATCCTTGGCCAGTATAATCAGCAT 22857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441254970013880