Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq21172 89.7 4e-13 seq20422 86.0 5e-12 >seq21172 Length=998197 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| ||||| |||| || || |||||||| || ||| ||||| ||||||||||| || Sbjct 271997 ACCACCTCTGAGCCTCAAGACGAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCCGC 271938 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | ||| | || |||| |||||| |||||||||||||| | ||| ||||| Sbjct 271937 TAGTGTTCGTCCATCTTCCAGTTGCTTACCGGCAAATATCAGCCTCTGTTGATC 271884 >seq20422 Length=233597 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| |||| ||||| |||||||| |||||||||||| |||||||| ||| Sbjct 131137 CCTCCACGCAGACGCAACACCAAGTGAAGCGTAGACTCCTTCTGAATATTGTAATCGGCC 131078 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || || | ||||| || || || || || |||||||||||| || Sbjct 131077 AAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGA 131018 Query 34021 ACGCTCTCTTTGTCC 34035 | | |||||||||| Sbjct 131017 ATACCCTCTTTGTCC 131003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396959049248314