Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq20186 84.2 5e-11 >seq20186 Length=139180 Score = 84.2 bits (92), Expect = 5e-11 Identities = 110/152 (72%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 30983 TCCTTGCGAATTGCTTCTTCTTCCTCGGGTGTGATCTCGTTTTCGATACCGAACACTTTT 31042 |||||||||| |||||||||||||| ||||| | || || ||||| |||||| | | Sbjct 113887 TCCTTGCGAAGCGCTTCTTCTTCCTCTGGTGTAAAATCCTTCTCGATGCCGAACTTTGTG 113828 Query 31043 CGAATCTCTTCCGGAGtttttc---cttttattttttCAGCGATAGCTTGACATAGAACA 31099 |||||||| || || |||| | || | || | |||||||||| ||| || | | Sbjct 113827 CGAATCTCGTCAGGGTTTTTGCAGGCTGTGATCATATCAGCGATAGTTTGGCAAGTGAGA 113768 Query 31100 TCAAGCATACTCTTTATGTTCAAGAAATTCGC 31131 ||||||| || ||||| | | ||||||| Sbjct 113767 TCAAGCAGGCTAGGGATGTTTAGGTAATTCGC 113736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102578211707950