Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq20251 89.7 6e-13 seq20199 89.7 6e-13 seq20837 86.0 7e-12 seq19542 86.0 7e-12 >seq20251 Length=854191 Score = 89.7 bits (98), Expect = 6e-13 Identities = 271/412 (66%), Gaps = 14/412 (3%) Strand=Plus/Plus Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 || ||||| || || || | || | |||| |||||| ||||| | ||| || || Sbjct 530375 CGGTCAAAACGCCCAGGTCTCAGCAAGGCGGAGTCAAGAATATCTGCTCTGTTGGTAGCA 530434 Query 10847 GCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGA 10903 || | || | | || || |||| || || ||||||||||| |||| ||| ||| Sbjct 530435 GCAACTACGATAACACCAGT---GTTACCCTCGAAACCATCCATCTCCGTCAGGAGCTGA 530491 Query 10904 TTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA---CCCGCACTGCGTTGCTTA 10960 || | || ||||| | ||||||||| || | |||| || | | | |||| || Sbjct 530492 TTAAGCGTCTGTTCTCTTTCATCATT-GCCTCC--ACCAATTCCAGTTCCTCTTTGCCTA 530548 Query 10961 CCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA 11020 || || || || |||||||| | ||||| || || || |||||| ||| || Sbjct 530549 CCAACAGCATCTATTTCATCCACAAAAACAATGCAGGGAGCATTTTCCTTGGCTTTTTTG 530608 Query 11021 AAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCG 11080 || | ||| ||||| || ||||| ||||| || ||||| || ||||| | | | Sbjct 530609 AAAAGATCGCGGACCCTTGAAGCACCAACACCGACGAACATCTCAACAAACTCAGAACCC 530668 Query 11081 GAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 11139 | | || | | |||||| || || |||||| ||||||||| || | | ||| || Sbjct 530669 G-AGATGGAAAAGAAGGGTACACCGGCTTCACCAGCGATGGCTTTTGCCAACAAGGTTTT 530727 Query 11140 CCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 11191 || || ||||| || | || || |||| ||||||| ||||||| Sbjct 530728 TCCAGTACCAGGAGGACCAACAAGGAGAACACCTTTGGGGATCCGGGCACCA 530779 >seq20199 Length=1256174 Score = 89.7 bits (98), Expect = 6e-13 Identities = 176/256 (69%), Gaps = 7/256 (3%) Strand=Plus/Plus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 || ||||| || ||||| | || || ||||| || || ||||||||||| || ||| Sbjct 343437 CCTTCGTCTCGTGAGATCAACTCGTTGGAGAAAGTCAACCCAGGCATGAGACCTCGTTTC 343496 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | |||||| || | || || || ||||||||||| || || || || ||||| Sbjct 343497 TTGAGCCAGAAGATTGAGCAGAAGCTGCCTGAGAAGAAGATACCTTCGACGCAAGCGAAG 343556 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 || | || | |||||| || | | || | || | ||||||||| ||||| || Sbjct 343557 GCGACGATTCTCTCAGCGAAAGTCTGAGA---TCCATCGATCCACTTCATGGCCCATTGG 343613 Query 126245 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT-TTTCTG 126302 || ||||| ||| || |||| || | ||| || |||||| | | ||| | | || Sbjct 343614 GCTTTTTTAGCGACGCAAGGGATTGTTTCGATGGCCCGAAAGAGATGGTCTCTCTCTTTG 343673 Query 126303 ATGGATCTTTGATGTA 126318 || ||||||||||| Sbjct 343674 TTG--TCTTTGATGTA 343687 >seq20837 Length=368380 Score = 86.0 bits (94), Expect = 7e-12 Identities = 187/278 (67%), Gaps = 4/278 (1%) Strand=Plus/Minus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||| ||||||||||||||||| | ||||| || || ||||| | |||||||| | Sbjct 291663 AAACCCATCCATCTCAGTCAACAACTGATTAATCGTCTGTTCCCTCTCATCATTTCC--T 291606 Query 10936 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 10993 | | ||| || || | | ||| |||| || || ||||| ||||| |||||||| ||| Sbjct 291605 CCTCCCATCCCAGCCCCTCTCTGCCTACCCACAGCATCAATCTCATCAATGAAAACAATA 291546 Query 10994 CACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCC 11053 || || || | || ||||| | ||| | ||||| ||||| ||||| Sbjct 291545 CAAGGAGCTTTCGCCTTAGCCTTCTCAAACAAATCCCTAACTCTAGACGCACCAACACCA 291486 Query 11054 ACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 11113 ||||| | |||||||| | | || | ||| || ||| || || | ||| || Sbjct 291485 ACAAAAAGCTCCACAAACTCAGAAGCCGCACAAGAGAAGAACGGTACTCCAGCTTCTCCA 291426 Query 11114 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 || | |||| || | ||| ||||| ||||| ||||| Sbjct 291425 GCCACCGCTCTAGCCAAGAGAGTCTTACCCGTACCAGG 291388 >seq19542 Length=58103 Score = 86.0 bits (94), Expect = 7e-12 Identities = 190/281 (68%), Gaps = 8/281 (3%) Strand=Plus/Minus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||||||||||||||||||||| || ||||| || || ||||| | ||||| ||| | Sbjct 19497 AAAGCCATCCATCTCAGTCAAAAGCTGATTAATAGTCTGTTCTCTCTCATCGTTCCC--A 19440 Query 10936 CATACC--ACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 10993 | | || ||| || | | |||| |||| || || ||||||||||| || ||||| ||| Sbjct 19439 CCTCCCATACCAGCTCCTCTTTGCCTACCAACAGCATCAATTTCATCTATAAAAACAATA 19380 Query 10994 CACGGTTGATTTTCACGGGCAACT--TCAAAGATATCTCGGACTCTCTTGGCACCGACAC 11051 || || |||| | | || ||||| | ||| | || || ||||| |||| Sbjct 19379 CAAGG--AGCTTTCGCCTTCGCCTTCTCAAATAAATCCCTAACCCTAGAAGCACCAACAC 19322 Query 11052 CCACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCAC 11111 | ||||| | || ||||| | | || | ||| | ||| || || | ||| | Sbjct 19321 CAACAAAAAGCTCAACAAACTCAGAAGCAGCACACGAAAAGAACGGCACTCCTGCTTCTC 19262 Query 11112 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGT 11152 | || | |||| || | || ||||| ||||| |||||| Sbjct 19261 CAGCCACAGCTCTAGCCAAAAGCGTCTTACCCGTTCCAGGT 19221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597194128989560