Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq20199 95.1 1e-14 seq20837 84.2 3e-11 seq20251 84.2 3e-11 >seq20199 Length=1256174 Score = 95.1 bits (104), Expect = 1e-14 Identities = 392/602 (65%), Gaps = 21/602 (3%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 || ||||| || ||||| | || || ||||| || || ||||||||||| || ||| Sbjct 343437 CCTTCGTCTCGTGAGATCAACTCGTTGGAGAAAGTCAACCCAGGCATGAGACCTCGTTTC 343496 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| || | || || ||| ||||||||||| || || || || ||||| Sbjct 343497 TTGAGCCAGAAGATTGAGCAGAAGCTGCCTGAGAAGAAGATACCTTCGACGCAAGCGAAG 343556 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGT 127717 || | | | ||| || || | | || | ||| | ||||||||| ||||| || Sbjct 343557 GCGACGATTCTCTCAGCGAAAGTCTGAGA---TCCATCGATCCACTTCATGGCCCATTGG 343613 Query 127718 GCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT-TTTCTG 127775 || ||||| ||| || |||| || | ||| || |||||| | | ||| | | || Sbjct 343614 GCTTTTTTAGCGACGCAAGGGATTGTTTCGATGGCCCGAAAGAGATGGTCTCTCTCTTTG 343673 Query 127776 ATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCC--GTGGACCATTTC 127833 || ||||||||||| | || | ||| || | | || || ||||| | || Sbjct 343674 TTG--TCTTTGATGTAAGTGTCGAGGAG--GAGACTGTACATCTCCGAGTGGATATTCTC 343729 Query 127834 ATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGG-CA- 127891 | | | ||| || ||||||||| |||||||| | || | |||||| || Sbjct 343730 AATCGCGATCTGGAACCCGTAGAAAGCACGCGCTTCAGAGACTTG---CACATCGGACAT 343786 Query 127892 AAATTGT-TATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGAT 127950 || || | || |||||| | ||| ||||| || || | || || || || |||| Sbjct 343787 GAACCGTGAAGCGAGATTCTCGAGAACGATTCCGTCAGATGCGGCGAAGAAAGCGAGGAC 343846 Query 127951 ATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCGA-GATCCTTTG 128009 | || ||||| | | || ||||| || ||| ||||||| ||| || | | Sbjct 343847 GTGTTTGATGAAGTGCCTCTCTCCGTCGTTGAGATTCTCCCAGTCG-CGACCGTCTTGAG 343905 Query 128010 AGAGATCTACCTCCTCCGCAGTCCA-ATTGCTCATTTGAGCCTTCTTATAGAGTTCCCAG 128068 | ||||| || || || || ||||| | | | || | || ||||| || | |||||| Sbjct 343906 ATAGATCGACTTCTTCAGCCGTCCAGAAAGATGCTTCG-GCTTTCTTGTACATCTCCCAG 343964 Query 128069 AGGTGGGGATACTTCAGGGGGAACACTGTAAATCTGTTTAGGGTAGAAGCCAGGATTGGC 128128 | || || || | | ||||||| ||||||| | |||| | || ||| | ||| Sbjct 343965 ATCTGAGGGTAGTGGATTGGGAACATACAGAATCTGTCTGGGGTTGGAGTCAGAAGCGGC 344024 Query 128129 TC 128130 || Sbjct 344025 TC 344026 >seq20837 Length=368380 Score = 84.2 bits (92), Expect = 3e-11 Identities = 186/277 (67%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || ||||||||||||||||| | ||||| || || ||||| | |||||||| | | Sbjct 291662 AACCCATCCATCTCAGTCAACAACTGATTAATCGTCTGTTCCCTCTCATCATTTCC--TC 291605 Query 12852 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909 | ||| || || | | ||| |||| || || ||||| || ||||||||||| |||| Sbjct 291604 CTCCCATCCCAGCCCCTCTCTGCCTACCCACAGCATCAATCTCATCAATGAAAACAATAC 291545 Query 12910 ACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCA 12969 | || || | || ||||| | ||| | ||||| ||||| ||||| | Sbjct 291544 AAGGAGCTTTCGCCTTAGCCTTCTCAAACAAATCCCTAACTCTAGACGCACCAACACCAA 291485 Query 12970 CAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCG 13029 |||| | ||||||||| | | || | ||| || ||| || || | ||| || | Sbjct 291484 CAAAAAGCTCCACAAACTCAGAAGCCGCACAAGAGAAGAACGGTACTCCAGCTTCTCCAG 291425 Query 13030 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 | | |||| || | ||| ||||| ||||| || || Sbjct 291424 CCACCGCTCTAGCCAAGAGAGTCTTACCCGTACCAGG 291388 >seq20251 Length=854191 Score = 84.2 bits (92), Expect = 3e-11 Identities = 270/412 (66%), Gaps = 14/412 (3%) Strand=Plus/Plus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 || ||||| || || || | || | |||| |||||| ||||| | ||| || || Sbjct 530375 CGGTCAAAACGCCCAGGTCTCAGCAAGGCGGAGTCAAGAATATCTGCTCTGTTGGTAGCA 530434 Query 12762 GCGATGACAACGATGCCCGTCTCGTTA---TCGAAGCCATCCATCTCAGTCAAGAGTTGA 12818 || | || | | || || |||| ||||| ||||||||||| |||| ||| ||| Sbjct 530435 GCAACTACGATAACACCAGT---GTTACCCTCGAAACCATCCATCTCCGTCAGGAGCTGA 530491 Query 12819 TTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA---CCCGCACTGCGTTGCTTA 12875 || | || ||||| | ||||||||| || | |||| || | | | |||| || Sbjct 530492 TTAAGCGTCTGTTCTCTTTCATCATT-GCCTCC--ACCAATTCCAGTTCCTCTTTGCCTA 530548 Query 12876 CCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA 12935 || || || || ||||| || | ||||| || || || |||||| ||| || Sbjct 530549 CCAACAGCATCTATTTCATCCACAAAAACAATGCAGGGAGCATTTTCCTTGGCTTTTTTG 530608 Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 12995 || | ||| || || || ||||| ||||| || |||||||| ||||| | | | Sbjct 530609 AAAAGATCGCGGACCCTTGAAGCACCAACACCGACGAACATCTCAACAAACTCAGAACCC 530668 Query 12996 GAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 13054 | | || | | |||||| || || |||||| ||||||||| || | | ||| || Sbjct 530669 G-AGATGGAAAAGAAGGGTACACCGGCTTCACCAGCGATGGCTTTTGCCAACAAGGTTTT 530727 Query 13055 CCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 13106 || || || || || | || || |||| ||||||| ||||||| Sbjct 530728 TCCAGTACCAGGAGGACCAACAAGGAGAACACCTTTGGGGATCCGGGCACCA 530779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613343416584120