Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq20422 104 2e-17 seq19364 95.1 8e-15 seq19979 89.7 4e-13 seq20655 84.2 2e-11 seq19059 84.2 2e-11 >seq20422 Length=233597 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||| ||||| ||||| || | || || || || ||||| |||||||| Sbjct 131138 GCCTCCACGCAGACGCAACACCAAGTGAAGCGTAGACTCCTTCTGAATATTGTAATCGGC 131079 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| ||| |||| || | || || || | || || | |||||||||||||| || Sbjct 131078 CAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGG 131019 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670 | || |||||||| || || ||||| ||| | | | ||||| | |||||| | Sbjct 131018 AATACCCTCTTTGTCCTGGATCTTGGCTTTAA-CGTTGTCAATAGTGTCGGAGCTTTCAA 130960 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| || || || ||||| | || || || ||||||||||| Sbjct 130959 CCTCCAAAGTGATAGTCTTTCCCGTCAGGGTCTTGACAAAGATCTGCAT 130911 >seq19364 Length=374643 Score = 95.1 bits (104), Expect = 8e-15 Identities = 155/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 39501 CAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCG 39560 ||||||||| ||||| || | ||| ||| ||||| ||| | ||||| |||||| || Sbjct 235625 CAAACGCAGAACCAAGTGGAGAGTCGATTCCTTTTGAATACTGTAATCAGCCAAAGTACG 235684 Query 39561 TTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTC 39620 | |||| || | || || ||| |||| || | | |||||||||| | | ||||| Sbjct 235685 TCCATCTTCAAGCTGCTTACCGGCAAAGATAAGCCTTTGCTGATCCGGAGTAATCCCTTC 235744 Query 39621 TTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAG 39679 ||||| || || |||| ||| | | || ||||| | |||||| || || | || Sbjct 235745 CTTGTCCTGAATCTTAGCCTTAA-CGTTGTCGACAGTGTCGGAGCTTTCAACCTCGAGAG 235803 Query 39680 TAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | || | || || || | ||| ||||| |||||||||||| Sbjct 235804 TCATCGGCTTGCCAGTAAGAGTCTTTACAAAGATCTGCATG 235844 >seq19979 Length=600886 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||| || | || || || || || || ||||||||| Sbjct 465563 CCACCACGGAGACGCAAGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCC 465504 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| || | || || || | || || | ||||||||| |||| || Sbjct 465503 AATGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 465444 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||||||||||| ||||| ||| | ||| | | | ||||| | ||| ||||| Sbjct 465443 ATACCTTCTTTGTCTTGAATTTTGGCTTTTA-CGTTGTCGATGGTGTCGGAGCTCTCCAC 465385 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| || || || || || ||||| || |||||||||||||| Sbjct 465384 CTCAAGAGTGATGGTCTTCCCGGTCAAAGTCTTAACGAAGATCTGCAT 465337 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 ||||| || | ||| ||| || || ||||| |||||||||||| ||| |||| ||| Sbjct 474499 ACCAAGTGGAGAGTAGATTCCTTCTGGATATTGTAATCGGCCAAAGTACGTCCATCTTCC 474440 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 || || || ||| | || || | | ||||||||||| | | ||| || || || | Sbjct 474439 AACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGTAATGCCCTCCTTATC-CTG 474381 Query 39631 ATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTT 39689 | | || | || ||| | | | |||||| | ||||||||| || | || || || || Sbjct 474380 AATCTTGGCTTTGACGTTGTCGATTGTGTCAGAGCTTTCCACCTCAAGGGTGATAGTCTT 474321 Query 39690 ACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | || || |||||||||||||| Sbjct 474320 TCCGGTGAGTGTCTTGACGAAGATCTGCAT 474291 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || |||||||| | ||| ||| || || || || |||||||||||| || | || Sbjct 464864 AGCACCAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGCCAAAGTACGGCCGTCT 464805 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 ||||| || || || |||| || | | ||||||||||| || | ||| || || || Sbjct 464804 TCCAACTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGAGGAATGCCCTCCTTATCC 464745 Query 39628 CATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686 || || ||||| ||| | | | |||||| | |||||||| || | || || || Sbjct 464744 TGGATCTTGGCTTTAA-CGTTGTCGATTGTGTCAGAACTTTCCACCTCAAGGGTGATAGT 464686 Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || | || || |||||||||||||| Sbjct 464685 CTTTCCGGTGAGTGTCTTGACGAAGATCTGCAT 464653 >seq20655 Length=190867 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||| || | ||| || || || ||||| |||||||| Sbjct 174445 CCACCACGGAGACGCAACACCAAGTGGAGAGTCGACTCCTTCTGGATATTGTAATCGGCT 174504 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || | || ||||| || || ||| | || || | | |||||||||| || Sbjct 174505 AAAGTACGGCCGTCTTCCAACTGCTTACCGGCGAAGATAAGCCTTTGCTGATCCGGAGGA 174564 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | |||||| || || || || ||||| ||| | | | ||||| | ||||||||| Sbjct 174565 ATGCCTTCCTTATCCTGAATCTTGGCTTTAA-CGTTGTCGATCGTGTCAGAGCTTTCCAC 174623 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || || || || || | ||| || |||||||||||||| Sbjct 174624 CTCGAGGGTGATCGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 174671 >seq19059 Length=274371 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||| || | ||| || || || ||||| |||||||| Sbjct 257949 CCACCACGGAGACGCAACACCAAGTGGAGAGTCGACTCCTTCTGGATATTGTAATCGGCT 258008 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || | || ||||| || || ||| | || || | | |||||||||| || Sbjct 258009 AAAGTACGGCCGTCTTCCAACTGCTTACCGGCGAAGATAAGCCTTTGCTGATCCGGAGGA 258068 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | |||||| || || || || ||||| ||| | | | ||||| | ||||||||| Sbjct 258069 ATGCCTTCCTTATCCTGAATCTTGGCTTTAA-CGTTGTCGATCGTGTCAGAGCTTTCCAC 258127 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || || || || || | ||| || |||||||||||||| Sbjct 258128 CTCGAGGGTGATCGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 258175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347279183709581