Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq20199 150 2e-31 seq20837 125 9e-24 seq18741 118 1e-21 seq19542 100 4e-16 seq20251 89.7 6e-13 >seq20199 Length=1256174 Score = 150 bits (166), Expect = 2e-31 Identities = 379/570 (66%), Gaps = 7/570 (1%) Strand=Plus/Minus Query 101746 ACAGATTTACTGTGTTCCCCCTGAAGTATCCACACCTCTGGGAACTCTATAAGAAGGCTC 101805 ||||||| | ||||||| | | || || || ||||||| | || ||||| || Sbjct 344001 ACAGATTCTGTATGTTCCCAATCCACTACCCTCAGATCTGGGAGATGTACAAGAAAGCCG 343942 Query 101806 AAATGAGTAATTGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGA 101865 || | ||||| |||||||| || ||||| || | || ||| ||| ||| Sbjct 343941 AAGCATCTTTCTGGACGGCTGAAGAAGTCGATCTATCTCAAGACGGTCGCGACTGGGAGA 343882 Query 101866 CTCTAAATGAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCG 101925 ||| || || || | | | ||||| ||| || |||| || ||||| || | || | Sbjct 343881 ATCTCAACGACGGAGAGAGGCACTTCATCAAACACGTCCTCGCTTTCTTCGCCGCATCTG 343822 Query 101926 ATGGAATTGTTTTTGAGAATATCAATAACAACTTTGCTGAT-GAGGTGCAATCCTCTGAA 101984 | ||||| ||| | |||||| || | || || || || |||||| ||||||| Sbjct 343821 ACGGAATCGTTCTCGAGAATCTCGCTT-CACGGTTCATGTCCGATGTGCAAGTCTCTGAA 343763 Query 101985 GCGAGATCTTTCTATGCGTATCA-ATGTCATAATGAAATGGTGCATGGGGAGACATACAG 102043 ||| | ||||||| | || || || | | ||| | | || ||||| ||||| Sbjct 343762 GCGCGTGCTTTCTACGGGTTCCAGATCGCG-ATTGAGAATATCCACTCGGAGATGTACAG 343704 Query 102044 TAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCAT 102103 | ||| | |||| || || || || |||| | || |||||| ||||| Sbjct 343703 TCTCCTCCTCGACACTTACATCAAAGACAACAAAGAGAGAGACCATCTCTTTCGGGCCAT 343644 Query 102104 CCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAA 102163 | ||||| | || || | || ||||| | ||||| ||||||||| | ||| | Sbjct 343643 CGAAACAATCCCTTGCGTCGCTAAAAAAGCCCAATGGGCCATGAAGTGGATCGATGGA-- 343586 Query 102164 GTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223 || | | || |||||| || || |||| || || || || || |||||||||||||| Sbjct 343585 -TCTCAGACTTTCGCTGAGAGAATCGTCGCCTTCGCTTGCGTCGAAGGTATCTTCTTCTC 343527 Query 102224 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283 || ||||||| | || | ||||||||||| |||||||||||||| || | || Sbjct 343526 AGGCAGCTTCTGCTCAATCTTCTGGCTCAAGAAACGAGGTCTCATGCCTGGGTTGACTTT 343467 Query 102284 CTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 |||||||||| | ||||| || ||||| || Sbjct 343466 CTCCAACGAGTTGATCTCACGAGACGAAGG 343437 >seq20837 Length=368380 Score = 125 bits (138), Expect = 9e-24 Identities = 239/343 (70%), Gaps = 18/343 (5%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAA 15976 |||||| | |||| | |||||| || || | |||| | ||| | |||| || | Sbjct 291720 ATCAAGAACATCAGGTCTATTCGTAGCTGCCAAAACAATCACACCAGA---GTTACCAGA 291664 Query 15977 A---CCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 | ||||||||||| ||||| | ||| ||||| || ||||||| |||||||| || Sbjct 291663 AAACCCATCCATCTCAGTCAACAACTGATTAATCGTCTGTTCCCTCTCATCATTTCCT-- 291606 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| ||||| | | ||| | ||||| |||||||||||||||||||| || || Sbjct 291605 CCTCCCATCCCAGCCCCTCTCTGCCTACCCACAGCATCAATCTCATCAATGAAAACAATA 291546 Query 16092 CATGGTTGATTTTCGC--GAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || || |||||| ||| ||||| | ||||| || || || | || || || Sbjct 291545 CAAGG--AGCTTTCGCCTTAGCCTTCTCAAACAAATCCC-TA-ACTCTAGACGCACCAAC 291490 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 ||||||||| | ||||||||| | | || | ||| || ||| || || || ||| Sbjct 291489 ACCAACAAAAAGCTCCACAAACTCAGAAGCCGCACAAGAGAAGAACGGTACTCCAGCTTC 291430 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 16250 || || | |||| || | ||||||||||||||||| ||| Sbjct 291429 TCCAGCCACCGCTCTAGCCAAGAGAGTCTTACCCGTACCAGGC 291387 >seq18741 Length=287810 Score = 118 bits (130), Expect = 1e-21 Identities = 286/426 (67%), Gaps = 13/426 (3%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAA 15977 ||||| || ||| | | || ||||| || | || | |||||| || | ||||| Sbjct 95304 TCAAGAATGTCAGCTCTGTTGGTTGCAGCAACCACGATAATACCGGTATTACCTTCAAAT 95245 Query 15978 CCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 16037 ||||||||||| || | |||||| || | ||| ||||| | ||||||||| || | Sbjct 95244 CCATCCATCTCAGTTAGAAGCTGATTCAGAGTCTGTTCTCTTTCATCATTACCT---CCA 95188 Query 16038 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 ||| || | | | |||| | || || |||||||| ||||| | ||||| ||||| Sbjct 95187 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCCACAAAGACAATGCAA 95128 Query 16095 GGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 16153 || ||||| || ||| ||| ||||| || || | | ||| || |||||||| Sbjct 95127 GGAGCGTTTTCCTTGGCTTTCTTGAAA-AGATCACGGACTCTCGAGGCACCAACACCAAC 95069 Query 16154 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 16212 ||||||||| ||||| | | | | | || | || ||| || ||| || |||||| | Sbjct 95068 AAACATCTCAACAAACTCAGAACCAG-AGATGGAGAAGAAAGGCACACCAGCTTCACCAG 95010 Query 16213 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 16272 |||| ||| || | ||| || || || ||||| || ||| ||||| ||||| Sbjct 95009 CAATAGCTTTCGCCAAAAGCGTTTTCCCGGTACCAGGAGGACCAATAAGGAGAACACCTT 94950 Query 16273 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCT 16332 || ||| || ||| || | | |||||||| | ||| ||||| || |||| Sbjct 94949 TCGGGATCCGAGCACCAACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCAACAA--- 94893 Query 16333 CTTCCA 16338 |||||| Sbjct 94892 CTTCCA 94887 >seq19542 Length=58103 Score = 100 bits (110), Expect = 4e-16 Identities = 196/282 (70%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||||||||| |||||||| ||||| | ||||| ||| | Sbjct 19497 AAAGCCATCCATCTCAGTCAAAAGCTGATTAATAGTCTGTTCTCTCTCATCGTTCCC--A 19440 Query 16034 CATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | || |||||| | | |||| | || || |||||||| ||||| || || || || Sbjct 19439 CCTCCCATACCAGCTCCTCTTTGCCTACCAACAGCATCAATTTCATCTATAAAAACAATA 19380 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || || |||||| || || ||||| | ||||| || || || | || || || Sbjct 19379 CAAGG--AGCTTTCGCCTTCGCCTTCTCAAATAAATCCC-TA-ACCCTAGAAGCACCAAC 19324 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 ||||||||| | ||| ||||| | | || | ||| | ||| || || | ||| Sbjct 19323 ACCAACAAAAAGCTCAACAAACTCAGAAGCAGCACACGAAAAGAACGGCACTCCTGCTTC 19264 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || | |||| || | ||| ||||||||||| || || Sbjct 19263 TCCAGCCACAGCTCTAGCCAAAAGCGTCTTACCCGTTCCAGG 19222 >seq20251 Length=854191 Score = 89.7 bits (98), Expect = 6e-13 Identities = 325/500 (65%), Gaps = 24/500 (5%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| || || || | || | ||| ||||| ||||| | | || || || Sbjct 530375 CGGTCAAAACGCCCAGGTCTCAGCAAGGCGGAGTCAAGAATATCTGCTCTGTTGGTAGCA 530434 Query 15945 GCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGG 16001 || | || | || ||| || |||| || |||||||||||||| |||| ||||| Sbjct 530435 GCAACTACGATAACACCAGT---GTTACCCTCGAAACCATCCATCTCCGTCAGGAGCTGA 530491 Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTT 16058 |||| || ||||| | ||||||||| || |||| |||| | | |||| | Sbjct 530492 TTAAGCGTCTGTTCTCTTTCATCATTGCCT---CCACCAATTCCAGTTCCTCTTTGCCTA 530548 Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 16118 || || ||||| || ||||| | || || ||||| || |||||| || || Sbjct 530549 CCAACAGCATCTATTTCATCCACAAAAACAATGCAGGGAGCATTTTCCTTGGCTTTTTTG 530608 Query 16119 AAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 16176 || ||||| || || |||| || || ||||| || |||||||| ||||| | | Sbjct 530609 AAAAGATCGCG--GACCCTTGAAGCACCAACACCGACGAACATCTCAACAAACTCAGAAC 530666 Query 16177 CGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 16235 | | | || | | |||||| ||| | |||||| || |||||| || | | || Sbjct 530667 CCG-AGATGGAAAAGAAGGGTACACCGGCTTCACCAGCGATGGCTTTTGCCAACAAGGTT 530725 Query 16236 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCA 16295 || || ||||| || ||| | ||||| ||||| || ||| ||| ||| || Sbjct 530726 TTTCCAGTACCAGGAGGACCAACAAGGAGAACACCTTTGGGGATCCGGGCACCAACGGCA 530785 Query 16296 AAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCC---AATTCATCTTTGGCG 16352 | | |||||||| | ||| | ||| ||||| | ||||| || || | ||||| Sbjct 530786 GTGAACCTCTCAGGCTTCTTCAAAAACTCCAC---CACTTCCATGAAATCTTGCTTGGCT 530842 Query 16353 GCGTCAATCCCCTCAACATC 16372 | |||| || ||||||| Sbjct 530843 TCATCAACTCCAGCAACATC 530862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620576685057040