Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq20199 95.1 1e-14 seq20271 87.8 2e-12 >seq20199 Length=1256174 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTC----CAGGCATGAGTCCTCT 119569 ||||| || || ||||| | ||| || | || |||||| |||||||||| |||| Sbjct 343437 CCTTCGTCTCGTGAGATCAACTCGTT---GGAG-AAAGTCAACCCAGGCATGAGACCTCG 343492 Query 119570 TTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGC 119629 |||||| ||||| ||||| | || || || || || |||||||| || || || || || Sbjct 343493 TTTCTTGAGCCAGAAGATTGAGCAGAAGCTGCCTGAGAAGAAGATACCTTCGACGCAAGC 343552 Query 119630 GAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCAGTT 119689 ||| |||| | | |||||| |||| |||| |||| |||||| | ||||| | Sbjct 343553 GAAGGCGACGATTCTCTCAGCGAAAGTCTGAGATCCATCGATCCACTTCATGGCCCATTG 343612 Query 119690 GGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 ||| || | | ||| |||| |||| |||||| Sbjct 343613 GGCTTTTTTAGCGACGCAAGGGATTGTTTCGATGGC 343648 >seq20271 Length=78964 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/112 (79%), Gaps = 8/112 (7%) Strand=Plus/Minus Query 31306 CCTCGGGAACATAGAGGCTCGTC--GAGATTGGGGTCATGCGAAGG--ACTACGTGGAGG 31361 |||||| |||||| |||| ||| |||| ||||| || || ||| |||||||||||| Sbjct 42750 CCTCGGAAACATACAGGC--GTCAAGAGACTGGGG--ATTCGCAGGGGACTACGTGGAGG 42695 Query 31362 CCATGTGGCTCATGCTTCAACAAGAACGTCCAGATGATTATGTCGTCGCAAC 31413 | |||||||||||||| || || || ||||||||||| || |||||||| Sbjct 42694 CTATGTGGCTCATGCTCCAGCAGGACAAACCAGATGATTACGTGGTCGCAAC 42643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588818765494600