Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq20837 134 2e-26 seq18741 114 2e-20 seq19542 111 2e-19 seq20251 107 2e-18 >seq20837 Length=368380 Score = 134 bits (148), Expect = 2e-26 Identities = 235/338 (70%), Gaps = 8/338 (2%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 |||||| | |||| | |||||| || || | |||| | ||| | | | | ||| Sbjct 291720 ATCAAGAACATCAGGTCTATTCGTAGCTGCCAAAACAATCACACCAGAGTTACCAGAAAA 291661 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||||| ||||| | || ||||| || ||||||| |||||||| || | | Sbjct 291660 CCCATCCATCTCAGTCAACAACTGATTAATCGTCTGTTCCCTCTCATCATTTCCT--CCT 291603 Query 9344 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 ||| ||||| | | ||| | ||||| |||||||||||||||||||| |||||||| Sbjct 291602 CCCATCCCAGCCCCTCTCTGCCTACCCACAGCATCAATCTCATCAATGAAAACAATACAA 291543 Query 9402 GGTTGATTTTCGCGG--GCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 || |||||| || | ||||| | ||| | ||| || || || ||||||| Sbjct 291542 GGAGC--TTTCGCCTTAGCCTTCTCAAACAAATCCCTAACTCTAGACGCACCAACACCAA 291485 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519 |||| | ||||||||| | | || | ||| || ||| || || || ||| || | Sbjct 291484 CAAAAAGCTCCACAAACTCAGAAGCCGCACAAGAGAAGAACGGTACTCCAGCTTCTCCAG 291425 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9557 | | |||| || | ||||||||||||||||| ||| Sbjct 291424 CCACCGCTCTAGCCAAGAGAGTCTTACCCGTACCAGGC 291387 >seq18741 Length=287810 Score = 114 bits (126), Expect = 2e-20 Identities = 283/425 (67%), Gaps = 11/425 (3%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || ||| | | || || || || | || | |||||| || | | ||||| Sbjct 95304 TCAAGAATGTCAGCTCTGTTGGTTGCAGCAACCACGATAATACCGGTATTACCTTCAAAT 95245 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 ||||||||||| || | ||| || || | ||| ||||| | ||||||||| || | Sbjct 95244 CCATCCATCTCAGTTAGAAGCTGATTCAGAGTCTGTTCTCTTTCATCATTACCTCC---A 95188 Query 9345 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 ||| || | | | |||| | || || |||||||| ||||| | |||||||| || Sbjct 95187 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCCACAAAGACAATGCAA 95128 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 || ||||| ||| | | || ||||| || || || ||| || ||||||||| Sbjct 95127 GGAGCGTTTTCCTTGGCTTTCTTGAAAAGATCACGGACTCTCGAGGCACCAACACCAACA 95068 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 |||||||| ||||| | | | | | || | || ||| || ||| || |||||| || Sbjct 95067 AACATCTCAACAAACTCAGAACCAG-AGATGGAGAAGAAAGGCACACCAGCTTCACCAGC 95009 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580 ||| ||| || | ||| || || || ||||| || ||| ||||| |||| Sbjct 95008 AATAGCTTTCGCCAAAAGCGTTTTCCCGGTACCAGGAGGACCAATAAGGAGAACACCTTT 94949 Query 9581 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 || ||| || ||| || | | |||||||| | ||| ||||| || |||| | Sbjct 94948 CGGGATCCGAGCACCAACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCAACAA---C 94892 Query 9641 TTCCA 9645 ||||| Sbjct 94891 TTCCA 94887 >seq19542 Length=58103 Score = 111 bits (122), Expect = 2e-19 Identities = 241/357 (68%), Gaps = 8/357 (2%) Strand=Plus/Minus Query 9204 CCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACA 9263 || || | ||| ||||| ||||| | ||| | ||| ||||| || | ||||| Sbjct 19574 CCCGGTCTAAGAAGCGCAGAGTCAAGAACATCCGGTCTATTAGTCGCAGCCAAGACAATG 19515 Query 9264 ATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCC 9323 | ||| | | | | ||| ||||||||||| |||||||| || |||||||| ||||| Sbjct 19514 ACACCAGAATTACCAGAAAAGCCATCCATCTCAGTCAAAAGCTGATTAATAGTCTGTTCT 19455 Query 9324 CGTTCATCATTCGCTGGCATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCT 9381 | ||||| ||| | | | || |||||| | | |||| | || || |||||||| | Sbjct 19454 CTCTCATCGTTCCC--ACCTCCCATACCAGCTCCTCTTTGCCTACCAACAGCATCAATTT 19397 Query 9382 CATCAATGAAGACAATACATGGTTGATTTTCGC--GGGCGATTTCAAAGAGATCGCGAAC 9439 |||| || || |||||||| || |||||| || | ||||| | ||| | ||| Sbjct 19396 CATCTATAAAAACAATACAAGG--AGCTTTCGCCTTCGCCTTCTCAAATAAATCCCTAAC 19339 Query 9440 CCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAA 9499 ||| || || ||||||||||| | ||| ||||| | | || | ||| | ||| Sbjct 19338 CCTAGAAGCACCAACACCAACAAAAAGCTCAACAAACTCAGAAGCAGCACACGAAAAGAA 19279 Query 9500 GGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || || | ||| || || | |||| || | ||| ||||||||||| || || Sbjct 19278 CGGCACTCCTGCTTCTCCAGCCACAGCTCTAGCCAAAAGCGTCTTACCCGTTCCAGG 19222 >seq20251 Length=854191 Score = 107 bits (118), Expect = 2e-18 Identities = 324/495 (65%), Gaps = 14/495 (3%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || || || | || | ||| ||||| ||||| | | || || || Sbjct 530375 CGGTCAAAACGCCCAGGTCTCAGCAAGGCGGAGTCAAGAATATCTGCTCTGTTGGTAGCA 530434 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | || | || ||| || | | || |||||||||||||| |||| || || ||| Sbjct 530435 GCAACTACGATAACACCAGTGTTACCCTCGAAACCATCCATCTCCGTCAGGAGCTGATTA 530494 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9368 | || ||||| | ||||||||| || |||| |||| | | |||| | || Sbjct 530495 AGCGTCTGTTCTCTTTCATCATTGCCT---CCACCAATTCCAGTTCCTCTTTGCCTACCA 530551 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || ||||| || ||||| | || ||||| || || |||||| ||| ||| || Sbjct 530552 ACAGCATCTATTTCATCCACAAAAACAATGCAGGGAGCATTTTCCTTGGCTTTTTTGAAA 530611 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 |||||||| |||||| || || ||||| || |||||||| ||||| | | | | | Sbjct 530612 AGATCGCGGACCCTTGAAGCACCAACACCGACGAACATCTCAACAAACTCAGAACCCG-A 530670 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || | | |||||| ||| | |||||| || |||||| || | | || || || Sbjct 530671 GATGGAAAAGAAGGGTACACCGGCTTCACCAGCGATGGCTTTTGCCAACAAGGTTTTTCC 530730 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTA 9607 ||||| || ||| | ||||| |||| || ||| ||| ||| || | | Sbjct 530731 AGTACCAGGAGGACCAACAAGGAGAACACCTTTGGGGATCCGGGCACCAACGGCAGTGAA 530790 Query 9608 TCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCC---AATTCATCTTTGGCGGCGTC 9664 |||||||| | ||| | ||| ||||| | ||||| || || | ||||| | || Sbjct 530791 CCTCTCAGGCTTCTTCAAAAACTCCAC---CACTTCCATGAAATCTTGCTTGGCTTCATC 530847 Query 9665 AATCCCCTCAACATC 9679 || || ||||||| Sbjct 530848 AACTCCAGCAACATC 530862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589823297250680