Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq17269 659 0.0 seq20510 596 2e-165 seq19338 403 2e-107 seq7960 118 1e-21 >seq17269 Length=4150 Score = 659 bits (730), Expect = 0.0 Identities = 744/994 (75%), Gaps = 2/994 (0%) Strand=Plus/Plus Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844 ||||| | ||| | ||| ||| | || || || || |||| ||||| || ||| || Sbjct 2742 TTCTGTAACTGGATAACTAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 2801 Query 163845 ATGATCCCTACGCTGCTTG-CAGCAACCATCTGTTTCATCGTCGCCTTCGTCGCTGCTCC 163903 ||||||||||| || ||| | ||||| | ||| || |||| ||| | |||||||| Sbjct 2802 ATGATCCCTAC-CTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 2860 Query 163904 CCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACAA 163963 || || || || ||||||||||||||||||||| | || || || | || || ||||| Sbjct 2861 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 2920 Query 163964 CATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCAT 164023 || || || ||||| || |||| | || || |||||| | || || ||||| || Sbjct 2921 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGAT 2980 Query 164024 TTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCGT 164083 |||||||| |||||| ||||||||||||| ||||| |||||||||| |||| | || Sbjct 2981 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAATGGTGGTCCTTATGAACTAATTGT 3040 Query 164084 CTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTGTCTTACCG 164143 | ||||| | | ||| | | || |||||||||||||||||||| || ||| Sbjct 3041 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 3100 Query 164144 TCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCATCCGC 164203 ||| |||||||||||||||||| |||||| || || || || |||||||| || | || Sbjct 3101 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 3160 Query 164204 AGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGGGCAT 164263 || ||| || |||| || | |||||||| || ||||| | ||||| || || || Sbjct 3161 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 3220 Query 164264 CTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGCACCC 164323 |||||| || ||||||| ||| | || ||||| || ||||||||||| || |||||||| Sbjct 3221 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 3280 Query 164324 CTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGCACGG 164383 || || ||| | || || ||||| ||||| ||||| || || || ||||| |||||||| Sbjct 3281 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCACGG 3340 Query 164384 TTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGG 164443 ||| |||| |||||| || | | |||||||| |||| ||| || || | || Sbjct 3341 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 3400 Query 164444 TTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCACGGTTACTTTGG 164503 ||||| || ||||||||||||||||| ||||||||||| || ||||||||||| ||||| Sbjct 3401 TTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGG 3460 Query 164504 TCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 164563 || ||||||||||||| ||| |||||||| || ||||| || || |||||| | || Sbjct 3461 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 3520 Query 164564 TGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACGATGGCATTCAA 164623 || ||||| || || || || ||||| || || | ||| || || ||||| ||||| Sbjct 3521 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAA 3580 Query 164624 CCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACAC 164683 ||| || |||||||| |||||||| || | | ||| |||| || ||||| | || || Sbjct 3581 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATAC 3640 Query 164684 TTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAACGC 164743 |||||| || || | ||||| ||| || ||||||||||||||||| || ||||| || Sbjct 3641 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 3700 Query 164744 TCACAACTTCCCTCTGGATCTCGCTGCTGCTGAG 164777 |||||||||||| || || || ||||||| |||| Sbjct 3701 TCACAACTTCCCGCTAGACCTAGCTGCTGTTGAG 3734 >seq20510 Length=252746 Score = 596 bits (660), Expect = 2e-165 Identities = 735/1002 (73%), Gaps = 2/1002 (0%) Strand=Plus/Plus Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265 ||||||||| | | || || ||||||||||| ||||||||||| || | || ||| Sbjct 62289 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 62348 Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 165325 || ||| ||| | ||| | || |||||| | || || || || || | || ||| Sbjct 62349 CCGTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 62408 Query 165326 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTT 165385 |||||||| || ||||| ||||||||| | || ||| || ||| | || || |||||| Sbjct 62409 TATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTT 62468 Query 165386 TCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAA 165445 |||||||| || | | | | |||||| | || | || ||||||||||| || ||| Sbjct 62469 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 62528 Query 165446 GGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGG 165505 || ||||| | ||| ||| | || || || ||||||||||| || |||||||| Sbjct 62529 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGC 62588 Query 165506 GCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGGTAT 165564 |||||||| |||| ||||| ||| | ||||| |||||| | || || ||| || | | Sbjct 62589 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-T 62647 Query 165565 CCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCT 165624 || || || ||||| || || ||||||||||| || |||||||||||| |||||||| Sbjct 62648 GCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCT 62707 Query 165625 CATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAAT 165684 || || || || |||||||| ||||||| || || || ||| || || || || || Sbjct 62708 AATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTAT 62767 Query 165685 CTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATAT 165744 || | ||| | ||||| | |||||||| ||||| ||||| ||||| || |||||||| Sbjct 62768 ATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACATTGAACCCATTTCATAT 62827 Query 165745 GATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGT 165804 |||||| || || ||| | ||||| | || |||| | || || ||||||| ||| || Sbjct 62828 GATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGT 62887 Query 165805 AGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCTAC 165864 ||| |||||| | | | |||||||||| | ||||||||| ||| || ||| || | || Sbjct 62888 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAAC 62947 Query 165865 TCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTCGG 165924 ||||| |||||||| || |||||||| || || ||||| || ||||| || ||||| || Sbjct 62948 TCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGG 63007 Query 165925 TATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGG 165984 |||| ||| ||||| | ||||| |||||||||||| | ||||| || || | || Sbjct 63008 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGG 63067 Query 165985 TCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTT 166044 | | |||| ||| | | || | | ||||| ||| | ||||| ||||| |||||||| Sbjct 63068 TTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTT 63127 Query 166045 TGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAAAAA 166104 || ||||| || ||| | ||||| ||||| || || ||||| || ||||| || ||||| Sbjct 63128 CGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAA 63187 Query 166105 CATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATGAGAA 166164 ||||| || || |||||| |||| |||||| |||| | ||||| || ||||| || Sbjct 63188 TATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 63247 Query 166165 CTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206 | || | |||||||| || ||||| || | || ||||| || Sbjct 63248 CCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 63289 Score = 150 bits (166), Expect = 2e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 164580 GGCATCTGGTTCACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAACGGTTTCAAC 164639 || || ||||| || || | ||| || || ||||| |||||||| || |||||||| Sbjct 30762 GGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAAT 30703 Query 164640 TTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTTCTC 164699 |||||||| || || | ||| |||| || ||||| | || |||||||| || || | Sbjct 30702 TTCAACCAATCAGTCGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATT 30643 Query 164700 AACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCTCTG 164759 ||||| ||| || ||||||||||||||||| || ||||| |||||||||||||| || Sbjct 30642 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCGCTA 30583 Query 164760 GATCTCGCTGCTGCTGAG 164777 || || ||||||| |||| Sbjct 30582 GACCTAGCTGCTGTTGAG 30565 >seq19338 Length=76300 Score = 403 bits (446), Expect = 2e-107 Identities = 596/838 (71%), Gaps = 5/838 (1%) Strand=Plus/Plus Query 165356 GAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCT 165415 || ||| | || ||| | ||||| ||||||| |||||| || | | | | |||||| Sbjct 38317 GAAGGTTCCAATTTTTTAACTGCTGCAGTTTTTACTCCTGCTAATATTTTAGCGCATTCT 38376 Query 165416 CTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGG 165475 | || | || ||||||||||| || ||||| ||||| | ||| ||| | || Sbjct 38377 TTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGC 38436 Query 165476 GGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGTTTC-ATGCTTCG 165534 || | || | || ||| || ||||||| |||||||| |||| ||||| ||| | || Sbjct 38437 GGTATGTGCGATTATGTTGCTGTCCACGGTGCTTTCGCATTAATAGGTTTTTATGTTACG 38496 Query 165535 TCAGTTTGAATTAGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTG 165593 ||| |||||| | || || || || | | || || || ||||| || || ||||||| Sbjct 38497 TCAATTTGAACTTGCTCGATCCGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTG 38555 Query 165594 GTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGT 165653 |||| || |||||||||||| ||||||| || || || || |||||||| |||||| Sbjct 38556 GTCCAATTGCTGTTTTTGTTTCTTTCTTTCTAATGTATCCACTAGGTCAATCTGGTTGGT 38615 Query 165654 TTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCAGGTTCCTTCTCTTCCTACAAGGAT 165713 | || || || ||| || || || || | || | ||| | ||||| | ||||| | Sbjct 38616 TCTTTGCGCCTAGTTTTGGTGTAGCGGCTTTATTTCGATTCATCCTCTTTTTCCAAGGGT 38675 Query 165714 TCCATAACTGGACCTTGAATCCCTTTCATATGATGGGTGTTGCAGGTATCCTGGGTGGTG 165773 | ||||| ||||| ||||| || |||||||||||||| || || ||| | |||| | | Sbjct 38676 TTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGACGCGG 38735 Query 165774 CATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGACG 165833 | |||| | || || ||||||| ||| ||| | |||||| | | | |||||||||| | Sbjct 38736 CTCTGCTATGCGCTATTCATGGTGCTACTGTA-AAAATACTTTATTTAAAGATGGTGATG 38794 Query 165834 ATGCAAATACTTTCAAGGCATTTGACTCTACTCAAGAGGAAGAAACCTACTCAATGGTTA 165893 ||||||||| ||| | ||| || | ||||||| |||||||| || |||||||| | Sbjct 38795 GTGCAAATACATTCCGTACTTTTAACCCAACTCAAGCAGAAGAAACTTATTCAATGGTCA 38854 Query 165894 CTGCAAACCGTTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGC 165953 | || |||| || ||||| || ||||| || ||| ||| |||||| | |||| | Sbjct 38855 CCGCTAACCACTTTTGGTCACAAATCTTTGGGGCTGCTTTTTCCAATAAGTGTTGGTAAC 38914 Query 165954 ATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTG 166013 ||| ||||||| | ||||| || || ||| | | || ||| | | || | | | Sbjct 38915 ATTCCTTTATGTTATTTGTACCGGTACCAGGTTTATTGATGAGTGCTCTTGGAGTAGTCG 38974 Query 166014 GTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAG 166073 |||| ||| | ||||| | | | |||||||| || ||||| || || | ||||| |||| Sbjct 38975 GTCTAGCTTTGAACCTACATCCCTATGACTTCGTTTCCCAGGAAATTCGTGCAGCGGAAG 39034 Query 166074 ACCCAGAGTTTGAAACCTTCTACACGAAAAACATTCTCTTGAATGAAGGTCTTCGTGCTT 166133 | || || ||||| || ||||| || |||| ||||| || || |||||| |||| |||| Sbjct 39035 ATCCGGAATTTGAGACTTTCTATAC-TAAAATATTCTTTTAAACGAAGGTATTCGCGCTT 39093 Query 166134 GGTTGGCACCAGTCGATCAACCGCATGAGAACTTTGTCTTCCCTGAAGAAGTTCTGCC 166191 || | || | ||||| || ||||| ||| || | |||||||| || ||||| || Sbjct 39094 GGATTGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 39151 >seq7960 Length=315 Score = 118 bits (130), Expect = 1e-21 Identities = 123/160 (77%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 166025 AACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTT 166084 ||||| ||||| |||||||| || ||||| || ||| | |||| ||||| || || ||| Sbjct 3 AACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTACAGCGGAAGATCCTGAATTT 62 Query 166085 GAAACCTTCTACACGAAAAACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCA 166144 || || |||||||| ||||| ||||| || || || ||| ||||||||||| |||| | Sbjct 63 GAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGCTGGCGGCT 122 Query 166145 GTCGATCAACCGCATGAGAA-CTTTGTCTTCCCTGAAGAA 166183 ||||| || ||||| || | || | |||||||| ||| Sbjct 123 CAAGATCAGCCTCATGAAAACCCTTATATTCCCTGATGAA 162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556776121963080