Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq17269 569 2e-157 seq20510 517 1e-141 seq19338 338 7e-88 >seq17269 Length=4150 Score = 569 bits (630), Expect = 2e-157 Identities = 721/989 (73%), Gaps = 2/989 (0%) Strand=Plus/Plus Query 162385 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162444 ||||| | ||| ||||| || | || || || || | || ||||| || || || Sbjct 2742 TTCTGTAACTGGATAACTAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 2801 Query 162445 ATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCC 162504 ||||| || || | ||| | ||||| | ||| || |||| ||| | |||||||| Sbjct 2802 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 2861 Query 162505 CCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAAC 162564 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 2862 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 2921 Query 162565 ATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATC 162624 || || || ||||| || |||| |||| || |||||| | || || || || ||| Sbjct 2922 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 2981 Query 162625 TGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTA 162684 |||||||| ||||| ||||||| ||||| || || |||||||||| |||| | || Sbjct 2982 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAATGGTGGTCCTTATGAACTAATTGTT 3041 Query 162685 TTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACCGT 162744 | ||||| | | || | | || ||||| ||||| |||||||| || |||| Sbjct 3042 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 3101 Query 162745 CTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCTGCACCTGTTGCAGCAGCATCGGC 162803 || ||||||||||| ||||| ||| || ||||| || || ||||||||||| || | || Sbjct 3102 CTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 3160 Query 162804 AGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTAT 162863 || ||| || |||| || | |||||||| ||| ||||| | ||||| | || || Sbjct 3161 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 3220 Query 162864 CAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATCC 162923 | |||||| ||||||| ||| |||| ||||| || |||||||||||||| ||||| || Sbjct 3221 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 3280 Query 162924 CTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGG 162983 || |||||||| ||||| || ||||| ||||| || || || || ||||| |||||||| Sbjct 3281 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCACGG 3340 Query 162984 TTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGG 163043 ||| ||||| || ||| | || | || || || |||| ||| || || | || Sbjct 3341 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 3400 Query 163044 TTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCGG 163103 ||||| ||||||||||||||||| || |||||||| || || || || ||||| || || Sbjct 3401 TTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGG 3460 Query 163104 TCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 163163 || ||||||||||||||||| |||||||| || ||||| || || |||||| | || Sbjct 3461 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 3520 Query 163164 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAA 163223 || ||||| || || || || ||||| || || | || | || ||||| ||||| Sbjct 3521 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAA 3580 Query 163224 CCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 163283 ||| || |||||||| |||||||| || | ||||| |||| || ||||| | || || Sbjct 3581 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATAC 3640 Query 163284 CTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAATGC 163343 ||||| || || | |||||||| | ||||||||||||||||| || || ||||| Sbjct 3641 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 3700 Query 163344 TCACAACTTCCCACTTGACCTGGCAGCTG 163372 |||||||||||| || ||||| || |||| Sbjct 3701 TCACAACTTCCCGCTAGACCTAGCTGCTG 3729 >seq20510 Length=252746 Score = 517 bits (572), Expect = 1e-141 Identities = 732/1022 (72%), Gaps = 8/1022 (1%) Strand=Plus/Plus Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGA 163680 |||||| | ||||||||||| | | | || || ||||| ||| | ||||||||||| Sbjct 62277 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 62336 Query 163681 TTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTC 163740 || | || |||| ||| ||| | || | || || ||| | || |||||||| || Sbjct 62337 CTATTGCTCTTTCCGTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 62396 Query 163741 GTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTTTCTC 163800 || || || ||||| || |||||| |||| | ||||||| | || ||| |||||| | Sbjct 62397 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 62456 Query 163801 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGG 163859 || || || || || || |||||| | | | | |||||| || || || || ||||| Sbjct 62457 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCT-TTGTTGTTACTGTGGGG 62515 Query 163860 TCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGT 163919 |||||| || || || ||||| || ||| ||| | || || || ||| |||||| Sbjct 62516 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGT 62575 Query 163920 GGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCG 163979 || |||||||| || || || | || ||||| ||| | || ||||||||||||||||| Sbjct 62576 TGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 62635 Query 163980 -CCTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCG 164038 ||| || | | |||| || ||||| || || ||||||||||| |||||||| || | Sbjct 62636 ATCTG-TTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTG 62694 Query 164039 TTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTG 164098 || ||||||||| || || || || |||||||| |||||||||| || || ||||| Sbjct 62695 TTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTG 62754 Query 164099 GAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGA 164158 | || || || || || ||||| || | || | |||||||||||||| ||||| |||| Sbjct 62755 GTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACATTGA 62814 Query 164159 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTC 164218 |||| || |||||||||||||| || ||| |||| |||| || |||||| ||||||| Sbjct 62815 ACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTC 62874 Query 164219 ACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGG 164278 | || | || || |||||||| || | ||||||||| || ||||| || || | Sbjct 62875 ATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTG 62934 Query 164279 CGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 164338 | ||| | | || || | ||||| |||||||| |||||||| || |||||||| |||| Sbjct 62935 CTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGT 62994 Query 164339 CGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 164398 | || ||||| || ||||| ||||| || || || ||| | ||||| || ||||| |||| Sbjct 62995 CACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 63054 Query 164399 TGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTC 164458 | || || | ||| |||||| || |||| | | || || ||| | || || | Sbjct 63055 TACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTAC 63114 Query 164459 GTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACTT 164518 |||| || || || || || || || | ||||| |||||||| || || ||||||| Sbjct 63115 GTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTT 63174 Query 164519 TCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTGACC 164578 ||||||| || || || | || |||||||| | || || ||| | || | || | Sbjct 63175 TCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATC 63234 Query 164579 AGC--CAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTTTA 164636 ||| || || ||| || | ||||| || || || || || | || || || ||||| Sbjct 63235 AGCCTCATGAAAAC--CTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTA 63292 Query 164637 AT 164638 || Sbjct 63293 AT 63294 Score = 136 bits (150), Expect = 4e-27 Identities = 128/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 163210 ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 163269 || ||||| |||||||| || |||||||| |||||||| || || ||||| |||| || Sbjct 30732 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTCGTTGATAGTCAAGGA 30673 Query 163270 CGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATG 163329 ||||| | || || ||||| || || | |||||||| | ||||||||||||||| Sbjct 30672 CGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATG 30613 Query 163330 CACGAGCGCAATGCTCACAACTTCCCACTTGACCTGGCAGCTG 163372 || || || ||||||||||||||||| || ||||| || |||| Sbjct 30612 CATGAACGTAATGCTCACAACTTCCCGCTAGACCTAGCTGCTG 30570 >seq19338 Length=76300 Score = 338 bits (374), Expect = 7e-88 Identities = 548/782 (70%), Gaps = 5/782 (1%) Strand=Plus/Plus Query 163783 GAGGGTGCTAATTTTCTCACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCT 163842 || ||| | |||||| | || || || || | || |||||| | | | | |||||| Sbjct 38317 GAAGGTTCCAATTTTTTAACTGCTGCAGTTTTTACTCCTGCTAATATTTTAGCGCATTCT 38376 Query 163843 CTTCTTCTT-CTCTGGGGTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGG 163901 || || || || ||||||||||| || || || ||||| || ||| ||| | || Sbjct 38377 -TTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGG 38435 Query 163902 GGGACTCTGGAATTTTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTC-ATGCTTC 163960 || | || ||| ||| || ||||||| || || || | || ||||| ||| | | Sbjct 38436 CGGTATGTGCGATTATGTTGCTGTCCACGGTGCTTTCGCATTAATAGGTTTTTATGTTAC 38495 Query 163961 GGCAATTTGAACTTGCTCGCCTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTG 164020 | ||||||||||||||||| || | | |||| || ||||| || || ||||||| Sbjct 38496 GTCAATTTGAACTTGCTCGATCCGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTG 38555 Query 164021 GTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGT 164080 |||| |||||||| || ||| | ||||||| || || || || |||||||| |||||| Sbjct 38556 GTCCAATTGCTGTTTTTGTTTCTTTCTTTCTAATGTATCCACTAGGTCAATCTGGTTGGT 38615 Query 164081 TCTTCGCTCCATCTTTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGAT 164140 |||| || || |||||| || || || | || ||||| || | || | ||||| | Sbjct 38616 TCTTTGCGCCTAGTTTTGGTGTAGCGGCTTTATTTCGATTCATCCTCTTTTTCCAAGGGT 38675 Query 164141 TTCATAACTGGACTTTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAG 164200 ||||||| ||||| |||||||| || |||||||||||||| || ||| |||| | || | Sbjct 38676 TTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGACGCGG 38735 Query 164201 CATTGCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAAC 164260 | |||||| |||||||| || | || | | ||||||| || | | ||||||| || Sbjct 38736 CTCTGCTATGCGCTATTCATGGTGCTACTG-TAAAAATACTTTATTTAAAGATGGTGATG 38794 Query 164261 AAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCA 164320 ||||| || || | ||| | | || || | |||||| |||||||| ||||||| Sbjct 38795 GTGCAAATACATTCCGTACTTTTAACCCAACTCAAGCAGAAGAAACTTATTCAATGGTCA 38854 Query 164321 CTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTC 164380 | || |||| ||| ||||| || ||||| || | ||| ||||| || ||| | ||| | Sbjct 38855 CCGCTAACCACTTTTGGTCACAAATCTTTGGGGCTGCTTTTTCCAATAAGTGTTGGTAAC 38914 Query 164381 ATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTG 164440 ||| || ||||| ||||| || || ||| ||| || || |||| | | | Sbjct 38915 ATTCCTTTATGTTATTTGTACCGGTACCAGGTTTATTGATGAGTGCTCTTGGAGTAGTCG 38974 Query 164441 GCCTTGCTCTCAATCTTCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAG 164500 | || ||| | || || | | | || || || || || || ||| | ||||| |||| Sbjct 38975 GTCTAGCTTTGAACCTACATCCCTATGACTTCGTTTCCCAGGAAATTCGTGCAGCGGAAG 39034 Query 164501 ATCCTGAGTTCGAGACTTTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCAT 164560 |||| || || |||||||||||||| || || || | || |||||||| | || || | Sbjct 39035 ATCCGGAATTTGAGACTTTCTATACTAA-AATATTCTTTTAAACGAAGGTATTCGCGCTT 39093 Query 164561 GG 164562 || Sbjct 39094 GG 39095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557435145981400