Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq17269 542 4e-149 seq20510 125 1e-23 >seq17269 Length=4150 Score = 542 bits (600), Expect = 4e-149 Identities = 718/995 (72%), Gaps = 6/995 (1%) Strand=Plus/Plus Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353 || ||| | ||| | ||| ||||| |||||| | ||| |||| ||||||||||| | Sbjct 2742 TTCTGTAACTGGATAACTAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 2801 Query 215354 ATGATTCCTTGCCTCCT---CGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCA 215410 ||||| ||| | | | |||| || || || | | |||| ||||||| ||||| Sbjct 2802 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCG---CATTCATTGCTGCT 2858 Query 215411 CCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAAC 215470 ||||| || ||||| || || || | || || ||| |||| ||| | | || || ||| Sbjct 2859 CCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAAC 2918 Query 215471 AACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCT 215530 || || || || ||||| || | |||| ||| || || || || || || ||||| Sbjct 2919 AATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCG 2978 Query 215531 ATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTT 215590 ||||||||||| ||| | ||||| |||||||| ||||||||||| |||| |||| || Sbjct 2979 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAATGGTGGTCCTTATGAACTAATT 3038 Query 215591 ATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTAC 215650 | | ||||| | ||||| | || || || | ||||||||||| || | Sbjct 3039 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 3098 Query 215651 AGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTT 215710 | | |||||| | |||||||| |||||| || || || ||||| | ||||| | Sbjct 3099 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACT 3158 Query 215711 GCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGA 215770 || || ||| | | || ||| | ||||| || ||| ||||||| |||||| || ||| Sbjct 3159 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 3218 Query 215771 ATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCAC 215830 |||||||| || ||||||| ||| |||| ||||||||||||||||||||||| |||||| Sbjct 3219 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 3278 Query 215831 CCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCAC 215890 ||||| |||||||||||||| |||||||| ||||| || || | || ||| |||||| Sbjct 3279 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAC 3338 Query 215891 GGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTAC 215950 ||||| | || || ||| | | ||||| || || || || | |||||| || | Sbjct 3339 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 3398 Query 215951 GGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTT 216010 ||||||| ||||| ||||| || ||||| |||||||| |||||||| |||||||| ||| Sbjct 3399 GGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTT 3458 Query 216011 GGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTT 216070 || || | ||||||||||| || ||||||||| || | | | || |||||| | Sbjct 3459 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 3518 Query 216071 GCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTC 216130 || || | || || | |||| ||| ||||| | ||| | |||||||| ||| Sbjct 3519 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTC 3578 Query 216131 AACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCT 216190 ||||| || |||||||| |||||||| || || || || || |||||| | Sbjct 3579 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAAT 3638 Query 216191 ACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAAC 216250 |||||||| || || ||||| | || |||||||||||||| ||||| || ||||| Sbjct 3639 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 3698 Query 216251 GCTCACAACTTCCCATTAGACTTGGCTGCTGCTGA 216285 |||||||||||||| ||||| | ||||||| ||| Sbjct 3699 GCTCACAACTTCCCGCTAGACCTAGCTGCTGTTGA 3733 >seq20510 Length=252746 Score = 125 bits (138), Expect = 1e-23 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 216119 ACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGT 216178 |||||||| |||||||| || |||||||| |||||||| || ||||| || || Sbjct 30732 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTCGTTGATAGTCAAGGA 30673 Query 216179 AAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATG 216238 |||||| ||||||||| || || ||||| | || |||||||||||||| ||| Sbjct 30672 CGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATG 30613 Query 216239 CACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCTGCTGA 216285 || || ||||| |||||||||||||| ||||| | ||||||| ||| Sbjct 30612 CATGAACGTAATGCTCACAACTTCCCGCTAGACCTAGCTGCTGTTGA 30566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744882691153360