Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq17269 627 1e-174 seq20510 567 9e-157 seq19338 416 3e-111 seq19441 91.5 2e-13 seq7960 82.4 9e-11 >seq17269 Length=4150 Score = 627 bits (694), Expect = 1e-174 Identities = 722/969 (75%), Gaps = 6/969 (1%) Strand=Plus/Plus Query 181821 AATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACC 181880 |||||||| || | || ||||||||||| |||||||||| || | ||| | ||||| Sbjct 2769 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 2828 Query 181881 ATCTGTTTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAA 181940 | ||| || | || ||| | || || ||||| || ||||| || ||||| || ||| Sbjct 2829 TCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 2888 Query 181941 CCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCC 182000 || || |||| || || | || || ||||| || || || ||||| || | || | Sbjct 2889 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACT 2948 Query 182001 TCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGG 182060 || || |||||| | || || ||||| |||||||||||||| || ||||||| ||| Sbjct 2949 TCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGG 3008 Query 182061 CTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGCC 182120 || || || |||||||||| |||| ||||| | ||||| | | || | || || Sbjct 3009 CTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGG--TGTA-GCT 3065 Query 182121 T---ACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGT 182177 | | ||||| ||||||||||||||| || ||| | ||||||||||| ||||| | Sbjct 3066 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 3125 Query 182178 GTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGT 182237 || ||||| || ||||| || || || || ||||||| ||||| |||| || | ||| Sbjct 3126 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGT 3185 Query 182238 CAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTG 182297 ||||| || || |||| ||||| || |||||||| || || ||||||| |||| | Sbjct 3186 CAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATT 3245 Query 182298 GTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGT 182357 || ||||| ||||||||||||||||||||||| || || |||||||| |||||||| ||| Sbjct 3246 GTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGT 3305 Query 182358 GTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTC 182417 |||||||| || || || |||||||| ||||||||||| ||||| || ||| | || Sbjct 3306 GTATTCGGCGGCTCCCTATTTAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATC 3365 Query 182418 CGTGAGACGACTGAGCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAG 182477 | || || || || | || || || | ||||||| ||||||||||||||||| Sbjct 3366 AGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAA 3425 Query 182478 ACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCA 182537 || || ||||| || || || || || || || || || |||||||||||||| || Sbjct 3426 ACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGT 3485 Query 182538 TTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGG 182597 |||||||| || ||||| || || |||||| | || || ||||| || || || || ||| Sbjct 3486 TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 3545 Query 182598 TTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAG 182657 || || || | ||| | || ||||| |||||||| || |||||||| |||||||| Sbjct 3546 TTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 3605 Query 182658 TCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCT 182717 || | ||||| |||| || ||||| |||| |||||||| ||| | | ||||||||| Sbjct 3606 TCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCT 3665 Query 182718 GGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTAGATCTTGCT 182777 ||||||||||||||||||||||| ||||| || ||||||||||| ||||| || ||| Sbjct 3666 AACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCGCTAGACCTAGCT 3725 Query 182778 GCTGCTGAG 182786 |||| |||| Sbjct 3726 GCTGTTGAG 3734 >seq20510 Length=252746 Score = 567 bits (628), Expect = 9e-157 Identities = 730/1007 (72%), Gaps = 0/1007 (0%) Strand=Plus/Plus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 ||||||||| | | || ||||| || ||||| || |||||||| || | || || Sbjct 62289 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 62348 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 || ||| ||| | || | || |||||| | || || ||| | ||||| || ||| Sbjct 62349 CCGTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 62408 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTC 183372 ||||| |||||| | ||| ||||||| | |||||| || ||| | || || || || Sbjct 62409 TATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTT 62468 Query 183373 TCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCAA 183432 || || |||||| | | | | |||||| | ||||||| ||||||||||| | ||| Sbjct 62469 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 62528 Query 183433 GGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGT 183492 || || ||| || ||||| ||| | || || || ||| |||||| || |||||||| Sbjct 62529 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGC 62588 Query 183493 GCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTATC 183552 || || || | || ||||| ||| | || || |||||||||||||| | || | Sbjct 62589 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTG 62648 Query 183553 CGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTT 183612 || ||||| ||||| || || ||||||||||| |||||||||||||| ||| || || Sbjct 62649 CGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCTA 62708 Query 183613 ATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATC 183672 || |||||||| ||||| ||| ||||||||||| |||||||| || ||||| || || Sbjct 62709 ATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATA 62768 Query 183673 TTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATG 183732 ||| ||||| | | || | || || || || || ||||| || ||||| || |||||| Sbjct 62769 TTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACATTGAACCCATTTCATATG 62828 Query 183733 ATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGTA 183792 |||||||| || ||| |||| || | || || || | ||||| ||||||| || ||| Sbjct 62829 ATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGTA 62888 Query 183793 GAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCACT 183852 || ||||| || | ||||||||| || ||||| |||||| || ||| | | ||| Sbjct 62889 GAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACT 62948 Query 183853 CAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGGG 183912 |||| ||||| || ||||| ||||| || || || || || |||||||||||||| ||| Sbjct 62949 CAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGG 63008 Query 183913 GTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGT 183972 ||||| ||| |||||| |||||||| || ||||||||||| ||||| || || | ||| Sbjct 63009 GTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGT 63068 Query 183973 CTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTT 184032 | ||| | | || |||| | | || || ||| | || || ||||| ||||| || Sbjct 63069 TTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTC 63128 Query 184033 GTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAGAAC 184092 || || || ||| | ||||| |||||||| ||||||||||| ||||| || || || Sbjct 63129 GTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAAT 63188 Query 184093 ATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATGAGAAT 184152 || ||| | || ||||| | || || ||| | || || ||||| || ||||| || Sbjct 63189 ATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAAC 63248 Query 184153 TTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199 ||||||| || |||||||| |||| | || || ||||||| ||| Sbjct 63249 CTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATG 63295 Score = 168 bits (186), Expect = 8e-37 Identities = 138/168 (82%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 182619 ACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 182678 || ||||| |||||||| || |||||||| |||||||| || || ||||| |||| || Sbjct 30732 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTCGTTGATAGTCAAGGA 30673 Query 182679 CGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATG 182738 ||||| |||| |||||||| ||| | | ||||||||| |||||||||||||||||| Sbjct 30672 CGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATG 30613 Query 182739 CATGAGCGTAACGCACACAACTTCCCACTAGATCTTGCTGCTGCTGAG 182786 ||||| ||||| || ||||||||||| ||||| || ||||||| |||| Sbjct 30612 CATGAACGTAATGCTCACAACTTCCCGCTAGACCTAGCTGCTGTTGAG 30565 >seq19338 Length=76300 Score = 416 bits (460), Expect = 3e-111 Identities = 613/861 (71%), Gaps = 9/861 (1%) Strand=Plus/Plus Query 183343 GAAGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCT 183402 |||||| | || ||| | || || || || | || |||||| | | | | |||||| Sbjct 38317 GAAGGTTCCAATTTTTTAACTGCTGCAGTTTTTACTCCTGCTAATATTTTAGCGCATTCT 38376 Query 183403 CTTCTGTTACTTTGGGGTCCTGAGTCTCAAGGGGACTTTCAACGCTGGTGCCAACTTGGG 183462 | ||||||| ||||||||||| | ||||| || ||| || ||||| ||| | || Sbjct 38377 TTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGC 38436 Query 183463 GGACTCTGGAATTTTGTGGCACTCCACGGTGCCTTTGCTCTCATTGGTTTC-ATGCTTCG 183521 || | || ||| ||| || |||||||||| || || | || ||||| ||| | || Sbjct 38437 GGTATGTGCGATTATGTTGCTGTCCACGGTGCTTTCGCATTAATAGGTTTTTATGTTACG 38496 Query 183522 ACAGTTTGAACTTGCTCGCTTGATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGG 183581 || |||||||||||||| | || | || ||||| ||||| || || |||||||| Sbjct 38497 TCAATTTGAACTTGCTCGATCCGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGG 38556 Query 183582 TCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTT 183641 ||| |||||||||||||| | | || || || |||||||| ||||| ||| ||||| Sbjct 38557 TCCAATTGCTGTTTTTGTTTCTTTCTTTCTAATGTATCCACTAGGTCAATCTGGTTGGTT 38616 Query 183642 CTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGAT---TCCTATTGTTCCTTCAGGG 183698 |||||| |||||||| || ||||| || | ||| ||| |||| || |||| |||| Sbjct 38617 CTTTGCGCCTAGTTTTGGTGTAGCGGCTTTATTTCGATTCATCCTCTTTTTCC--AAGGG 38674 Query 183699 TTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGG 183758 ||| || || ||||| || ||||| || |||||||||||||| || ||| |||| | | Sbjct 38675 TTT-CATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGACGC 38733 Query 183759 AGCACTACTCAGTGCTATCCATGGTGTCACAGTAGAGAATACATTGTATGAAGATGGAGA 183818 || || || | ||||| ||||||| || ||| | ||||| || | | ||||||| || Sbjct 38734 GGCTCTGCTATGCGCTATTCATGGTGCTACTGTA-AAAATACTTTATTTAAAGATGGTGA 38792 Query 183819 ACAAGCAAACACATTCAAGGCATTTGATTCCACTCAAGAAGAAGAGACGTATTCTATGGT 183878 ||||| |||||| | ||| | | ||||||| |||||| || ||||| ||||| Sbjct 38793 TGGTGCAAATACATTCCGTACTTTTAACCCAACTCAAGCAGAAGAAACTTATTCAATGGT 38852 Query 183879 TACAGCGAATCGTTTCTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTT 183938 || || || | || |||||||||||||| |||| ||| ||| ||||||| |||||| Sbjct 38853 CACCGCTAACCACTTTTGGTCACAAATCTTTGGGGCTGCTTTTTCCAATAAGTGTTGGTA 38912 Query 183939 GCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCAT 183998 || | ||||||||| ||||| || || ||| | | | | | || |||| | | Sbjct 38913 ACATTCCTTTATGTTATTTGTACCGGTACCAGGTTTATTGATGAGTGCTCTTGGAGTAGT 38972 Query 183999 TGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGA 184058 || || ||| | || || | | | ||||| || || || || || | ||||| || Sbjct 38973 CGGTCTAGCTTTGAACCTACATCCCTATGACTTCGTTTCCCAGGAAATTCGTGCAGCGGA 39032 Query 184059 AGATCCAGAATTTGAGACGTTCTACACAAAGAACATACTTCTTAATGAAGGACTACGTGC 184118 |||||| ||||||||||| ||||| || || || || ||| | || ||||| | || || Sbjct 39033 AGATCCGGAATTTGAGACTTTCTATACTAA-AATATTCTTTTAAACGAAGGTATTCGCGC 39091 Query 184119 ATGGTTAGCACCTTCTGATCAACCACATGAGAATTTTATATTTCCAGAGGAGGTATTACC 184178 ||| | || || ||||| || ||||| || ||||||| || |||||||| |||| Sbjct 39092 TTGGATTGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 39151 Query 184179 TAGAGGCAATGCTCTTTGATG 184199 | | || ||||||| ||| Sbjct 39152 ACGTGAAAACGCTCTTTAATG 39172 >seq19441 Length=80586 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/138 (76%), Gaps = 5/138 (4%) Strand=Plus/Plus Query 183568 ATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGT 183627 || || |||||||||| |||||||||||||| ||| || || || |||||||| ||| Sbjct 18201 ATCGCATTCTCTGGTCTAATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGT 18260 Query 183628 CAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAG-AT--TCCTA 183684 || ||| ||||||||||| | |||||| || ||||| | || ||| | || |||| Sbjct 18261 CAATCTGGTTGGTTCTTTGCGCGTAGTTTTGGTGTAGCGACTATATTTCGTATCATCCTC 18320 Query 183685 TTGTTCCTTCAGGGTTTC 183702 || |||| |||||||| Sbjct 18321 TTTTTCC--AAGGGTTTC 18336 >seq7960 Length=315 Score = 82.4 bits (90), Expect = 9e-11 Identities = 132/189 (70%), Gaps = 7/189 (4%) Strand=Plus/Plus Query 184012 AATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTT 184071 || || ||||| ||||| || || || || ||| | |||| |||||||| |||||| Sbjct 3 AACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTACAGCGGAAGATCCTGAATTT 62 Query 184072 GAGACGTTCTACACAAAGAACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCT 184131 ||||| |||||||| || || || ||| | || || || | ||||| ||| | || || Sbjct 63 GAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGCTGGCGGCT 122 Query 184132 TCTGATCAACCACATGAGAA-TTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGC 184190 ||||| || ||||| || ||||||| || || || | || | || || || Sbjct 123 CAAGATCAGCCTCATGAAAACCCTTATATTCCCTGATGA------ATCTCGTGGTAACGC 176 Query 184191 TCTTTGATG 184199 ||||| ||| Sbjct 177 TCTTTAATG 185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611532700106600