Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq17269 648 0.0 seq20510 594 6e-165 seq19338 428 5e-115 >seq17269 Length=4150 Score = 648 bits (718), Expect = 0.0 Identities = 736/983 (75%), Gaps = 8/983 (1%) Strand=Plus/Plus Query 164773 TGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCC- 164831 ||| | ||| ||| | || |||||||| | || ||||| |||||| | |||||||| Sbjct 2751 TGGATAACTAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 2810 Query 164832 --CTGTTTGCTCGCCGCTACAATTTGTTTTATTACTGCATTCATCGCTGCTCCCCCTGTG 164889 || ||| ||| || | ||| |||||| |||||||| |||||||| || || Sbjct 2811 ACCTTATTGACCGCAACTTCCGTTT---TTATTATCGCATTCATTGCTGCTCCTCCAGTA 2867 Query 164890 GACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATC 164949 || ||||||||||||||||||||||| | || ||||| | ||||| ||||| || || Sbjct 2868 GATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATT 2927 Query 164950 TCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAA 165009 || ||||| | |||| ||||| || || || | || || || || || |||||| Sbjct 2928 TCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAA 2987 Query 165010 GCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCAC 165069 |||||| || | ||||||||| | ||||| ||||||||||| | | |||| | ||| Sbjct 2988 GCTGCATCCGTTGATGAATGGCTATACAATGGTGGTCCTTATGAACTAATTGTTCTACAC 3047 Query 165070 TTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGT 165129 || | | ||||||||||| || |||||||||||||||||||| || ||| || ||| Sbjct 3048 TTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGT 3107 Query 165130 ATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTC 165189 ||||||||||||||| || |||||| || ||||| || |||||| | || |||||| Sbjct 3108 ATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTC 3167 Query 165190 CTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGT 165249 || |||| || | |||||||| ||||| ||||||||||||||||| || ||||||||| Sbjct 3168 TTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGT 3227 Query 165250 ACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCAC 165309 ||||| |||| |||| | || ||||| || || || |||||||||||||| || || ||| Sbjct 3228 ACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCAC 3287 Query 165310 ATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTT 165369 ||| | || || ||||| |||||||| || || || || ||||||||| || | Sbjct 3288 ATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCACGGTTCCTTG 3347 Query 165370 GTTACTTCCTCACTCGTCCGCGAGACAACTGAAACAGAGAGTCAGAACTACGGTTATAAG 165429 || ||||| | || | || || || |||| || | || | ||||| | Sbjct 3348 GTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGA 3407 Query 165430 TTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTC 165489 || || ||||||||||| || || ||||| || ||||| ||||| || || || || | Sbjct 3408 TTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTG 3467 Query 165490 ATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGG 165549 || |||||||| || ||||||||||| ||||| | || |||||| | || || ||| Sbjct 3468 ATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGG 3527 Query 165550 CCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAAC 165609 || ||||| ||||| ||||| |||||| | ||| |||| || ||||| |||||||| || Sbjct 3528 CCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAT 3587 Query 165610 GGTTTCAACTTCAACCAGTCTATTGTTGATAGTC-AGAACAAAATCATCCCTACTTGGGC 165668 |||||||| |||||||| || | |||||||||| || || | || ||||||||| Sbjct 3588 GGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGAC-GTGTTATTAATACTTGGGC 3646 Query 165669 TGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAA 165728 ||| || | ||||||||| || |||||||||||||||||||| ||||| |||||||| Sbjct 3647 TGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAA 3706 Query 165729 CTTCCCCCTCGACCTCGCTGCTG 165751 |||||| || ||||| ||||||| Sbjct 3707 CTTCCCGCTAGACCTAGCTGCTG 3729 >seq20510 Length=252746 Score = 594 bits (658), Expect = 6e-165 Identities = 726/988 (73%), Gaps = 2/988 (0%) Strand=Plus/Plus Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250 || || ||||||||||| ||||||||||| || | || |||| ||| ||| | ||| Sbjct 62307 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCGTGTGCCTATTTCGCT 62366 Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310 | || |||||| |||| || || || || || || ||||||||||||||| | || Sbjct 62367 TTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCT 62426 Query 166311 AGCAGTTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCT 166370 || ||| | || ||| || ||| | || || |||||||||||||| || || | Sbjct 62427 AGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAATAGT 62486 Query 166371 ATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGG 166430 | | |||||| | | | || ||||||||||| || ||||| ||||| | ||| Sbjct 62487 TTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGG 62546 Query 166431 TGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGT 166490 || ||| | || || || ||||| ||||||||||||||||| ||||| || |||| ||| Sbjct 62547 TGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGGT 62606 Query 166491 TTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCAAT 166549 || ||| | || || |||||| | ||||| ||| | | | || || || |||||||| Sbjct 62607 TTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAAT 62665 Query 166550 CGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCA 166609 ||| || |||||||| |||||||| || ||| ||||||||| || || || || ||||| Sbjct 62666 CGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCA 62725 Query 166610 ATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTT 166669 ||| ||||||| || || || ||| || || | || || || |||||| |||| || Sbjct 62726 ATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTT 62785 Query 166670 CCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTAT 166729 | |||||||| || || |||||| |||||||||||||||||||||| || || ||| | Sbjct 62786 TTTCCAAGGATTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGT 62845 Query 166730 TCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCA 166789 || || | || |||| | || || ||||||| ||| ||||| || ||| | | | | Sbjct 62846 ACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGA 62905 Query 166790 AGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTA 166849 ||||||||| |||||||| ||| || || || | ||||||| |||||||| || Sbjct 62906 AGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTA 62965 Query 166850 TTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAA 166909 ||||||||| || || ||||||| |||||| || ||||| || |||| ||| ||||| Sbjct 62966 TTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAA 63025 Query 166910 GAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCAT 166969 | ||||| |||||||||||| | ||||| || || | ||| | |||| ||| | | Sbjct 63026 ACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTCT 63085 Query 166970 CGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAG 167029 || | | ||||| ||| | ||||| ||||| |||||||| |||||||| ||| | | Sbjct 63086 TGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCG 63145 Query 167030 GGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGG 167089 ||||| || ||||| || ||||| || |||||||| || || ||||| || || || || Sbjct 63146 TGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGG 63205 Query 167090 TATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGA 167149 ||| || |||||||||| || ||||| |||||||| | | |||||||||| || Sbjct 63206 TATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGA 63265 Query 167150 GGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 |||||| || | || |||||||| ||| Sbjct 63266 GGTTCTACCACGTGGAAACGCTCTTTAA 63293 Score = 172 bits (190), Expect = 6e-38 Identities = 156/194 (80%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 165559 GGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAAC 165618 ||||| ||||| |||||| | ||| |||| || ||||| |||||||| || |||||||| Sbjct 30762 GGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAAT 30703 Query 165619 TTCAACCAGTCTATTGTTGATAGTCA-GAACAAAATCATCCCTACTTGGGCTGACGTTCT 165677 |||||||| || | ||||||||||| | || | || |||||||||||| || | Sbjct 30702 TTCAACCAATCAGTCGTTGATAGTCAAGGACGTGTT-ATTAATACTTGGGCTGATATTAT 30644 Query 165678 GAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCT 165737 ||||||||| || |||||||||||||||||||| ||||| |||||||||||||| || Sbjct 30643 TAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCGCT 30584 Query 165738 CGACCTCGCTGCTG 165751 ||||| ||||||| Sbjct 30583 AGACCTAGCTGCTG 30570 >seq19338 Length=76300 Score = 428 bits (474), Expect = 5e-115 Identities = 611/856 (71%), Gaps = 3/856 (0%) Strand=Plus/Plus Query 166323 GAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCT 166382 || ||| | || ||| | ||||| ||||||| |||||| || || | | | |||||| Sbjct 38317 GAAGGTTCCAATTTTTTAACTGCTGCAGTTTTTACTCCTGCTAATATTTTAGCGCATTCT 38376 Query 166383 CTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGTGCCAACTTGGA 166442 | | | || ||||||||||| || ||||| ||||| | ||||| ||| | || Sbjct 38377 TTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGC 38436 Query 166443 GGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTC-ATGCTTCG 166501 || | || | | ||||||| ||||||||||||| || |||| ||||| ||| | || Sbjct 38437 GGTATGTGCGATTATGTTGCTGTCCACGGTGCTTTCGCATTAATAGGTTTTTATGTTACG 38496 Query 166502 GCAGTTTGAAATCGCTCGTCTAGTAGGTATTCGTCCGTACAATGCAATCGCTTTTTCTGG 166561 || |||||| | ||||| || | || || || ||||||||||| || ||||| Sbjct 38497 TCAATTTGAACTTGCTCGATCCGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGG 38556 Query 166562 TCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTT 166621 ||| |||||||| || ||| | ||||||| || || || || |||||||| ||||||| Sbjct 38557 TCCAATTGCTGTTTTTGTTTCTTTCTTTCTAATGTATCCACTAGGTCAATCTGGTTGGTT 38616 Query 166622 TTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATT 166681 || || || ||| || || | || | || |||||| |||| || | ||||| || Sbjct 38617 CTTTGCGCCTAGTTTTGGTGTAGCGGCTTTATTTCGATTCATCCTCTTTTTCCAAGGGTT 38676 Query 166682 CCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGC 166741 || || |||||| |||||||||||||||||||||| || || ||| | || | | || Sbjct 38677 TCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGACGCGGC 38736 Query 166742 ATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACA 166801 |||| | || || ||||||| ||| ||| | || ||| | | | |||||||||| Sbjct 38737 TCTGCTATGCGCTATTCATGGTGCTACTGTA-AAAATACTTTATTTAAAGATGGTGATGG 38795 Query 166802 GGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTATTCAATGGTTAC 166861 |||||||| ||| | || || | ||||||| |||||||| ||||||||||| || Sbjct 38796 TGCAAATACATTCCGTACTTTTAACCCAACTCAAGCAGAAGAAACTTATTCAATGGTCAC 38855 Query 166862 AGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCA 166921 || |||| || |||||| || ||||| || ||| ||| |||||| | |||| || Sbjct 38856 CGCTAACCACTTTTGGTCACAAATCTTTGGGGCTGCTTTTTCCAATAAGTGTTGGTAACA 38915 Query 166922 TTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCATCGGTATTATTGG 166981 || ||||||| | ||||| || || ||| | | || ||| | | || | | || Sbjct 38916 TTCCTTTATGTTATTTGTACCGGTACCAGGTTTATTGATGAGTGCTCTTGGAGTAGTCGG 38975 Query 166982 TCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGA 167041 ||| ||| | ||||| | | | |||||||| |||||||| ||| | | ||||| || || Sbjct 38976 TCTAGCTTTGAACCTACATCCCTATGACTTCGTTTCCCAGGAAATTCGTGCAGCGGAAGA 39035 Query 167042 TCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCTTG 167101 ||| || ||||| || |||||||| || || ||||| || || || ||||| || |||| Sbjct 39036 TCCGGAATTTGAGACTTTCTATACTAA-AATATTCTTTTAAACGAAGGTATTCGCGCTTG 39094 Query 167102 GATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCTTCCTAG 167161 ||| || || ||||| |||||||| | | |||||||||| |||||||| || | Sbjct 39095 GATTGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACG 39154 Query 167162 AGGTAACGCTCTCTAA 167177 | |||||||| ||| Sbjct 39155 TGAAAACGCTCTTTAA 39170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563510323703680