Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq17269 648 0.0 seq20510 131 2e-25 >seq17269 Length=4150 Score = 648 bits (718), Expect = 0.0 Identities = 734/984 (75%), Gaps = 0/984 (0%) Strand=Plus/Minus Query 83973 GCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCG 84032 || || || | ||||||||| || || |||||||| ||||| |||||||||||||| Sbjct 3724 GCTAGGTCTAGCGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 3665 Query 84033 GCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTC 84092 ||||| |||| | ||| ||||| ||||| | |||||| ||| ||||| || | Sbjct 3664 GCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGAT 3605 Query 84093 TGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAAC 84152 || ||||| || || ||||| || || || ||||| || |||| ||| | ||||| |||| Sbjct 3604 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAAC 3545 Query 84153 CAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAG 84212 ||||| || || || |||||||| || ||||| || || | ||||||| ||||||||| Sbjct 3544 CAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 3485 Query 84213 GAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTT 84272 |||||| |||||||| | || || || || ||||||||||| ||||| || |||||| Sbjct 3484 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGTT 3425 Query 84273 TCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGG 84332 || |||||||||||||| ||||||| | || || |||||||||| ||||| | | Sbjct 3424 TCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 3365 Query 84333 ATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACA 84392 || | | |||||| || | ||||| ||||| ||| ||||| | || ||||||||| Sbjct 3364 ATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTAAATAGGGAGCCGCCGAATACA 3305 Query 84393 CCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACA 84452 ||||| || || ||||||||||| || |||||||| ||||| || || |||||||| ||| Sbjct 3304 CCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACA 3245 Query 84453 AGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGC 84512 | ||| ||||||| || || ||||| || || ||||| |||||||| ||| ||||| Sbjct 3244 ATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 3185 Query 84513 CCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACA 84572 || | || || | | ||| ||||||| || |||||||| ||||| || || |||||| Sbjct 3184 CCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 3125 Query 84573 CAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCA 84632 ||||| ||||||||||| ||||| | ||||||||| ||||||||||| ||| | Sbjct 3124 GCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAA 3065 Query 84633 AATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCAT 84692 | |||||| | ||||| | |||| |||| |||||| |||||||| ||||||||| Sbjct 3064 GCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAGCCAT 3005 Query 84693 TCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGAT 84752 || || | ||| |||||||| || || || ||||| | ||||||||| ||| | Sbjct 3004 TCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTA 2945 Query 84753 GGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCA 84812 |||| | |||||| ||||| || ||||||||||| | ||||| |||| || || ||| Sbjct 2944 GGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCA 2885 Query 84813 CGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAAACAGACAGTG 84872 || ||||| |||||||| ||||| || ||| ||| |||||| || || ||| | ||| Sbjct 2884 CGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACGGAAGTT 2825 Query 84873 GCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTA 84932 || | | || || || ||||| | | |||||||| |||| || | ||| || | | Sbjct 2824 GCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGATTTTCA 2765 Query 84933 GTGGAGGTGACCCAATCACAGAAG 84956 ||| || | ||| | ||||||| Sbjct 2764 GTGCTAGTTATCCAGTTACAGAAG 2741 >seq20510 Length=252746 Score = 131 bits (144), Expect = 2e-25 Identities = 144/190 (76%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 83973 GCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCG 84032 || || || | ||||||||| || || |||||||| ||||| |||||||||||||| Sbjct 30575 GCTAGGTCTAGCGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 30634 Query 84033 GCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACT- 84091 ||||| |||| | ||| ||||| ||||| | |||||| ||| ||||| || |||| Sbjct 30635 GCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAAC--GACTG 30692 Query 84092 -CTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAA 84150 || ||||| || || ||||| || || || ||||| || |||| ||| | ||||| || Sbjct 30693 ATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAA 30752 Query 84151 ACCAAATGCC 84160 ||||||| || Sbjct 30753 ACCAAATACC 30762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571121091371560