Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq17269 562 9e-156 seq20510 141 3e-29 >seq17269 Length=4150 Score = 562 bits (622), Expect = 9e-156 Identities = 722/996 (72%), Gaps = 0/996 (0%) Strand=Plus/Minus Query 35960 AGACTCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTC 36019 || |||| |||| |||||||| || ||||||||||| || ||||| |||||||||||||| Sbjct 3737 AGCCTCAACAGCAGCTAGGTCTAGCGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 3678 Query 36020 CATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGA 36079 ||| || | || |||||||||| ||| ||||||||||| | || | ||| | Sbjct 3677 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACT 3618 Query 36080 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 36139 |||||| ||||| || ||||| || || || || || || ||||||||||| | || Sbjct 3617 ATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACC 3558 Query 36140 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCG 36199 | ||| |||| ||| || | || |||||||| || | ||||||||||||| || Sbjct 3557 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 3498 Query 36200 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAAC 36259 ||| || || |||||||| |||||||| | || ||||| || || ||||| || || Sbjct 3497 AGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTAC 3438 Query 36260 AATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCC 36319 |||||| || || ||||||||||| |||||| | || || | || ||||||| | Sbjct 3437 AATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTC 3378 Query 36320 AGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGC 36379 || ||||| | || | ||||| || | |||||||||||| |||| | Sbjct 3377 TGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTAAATAGGGA 3318 Query 36380 TCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTC 36439 || |||||||| || || ||||| | ||| || || || |||||||| || ||||| || Sbjct 3317 GCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTC 3258 Query 36440 TGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGA 36499 ||||| || |||| |||||| |||||||| || || || || ||||||||||||||||| Sbjct 3257 AGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGA 3198 Query 36500 GAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGC 36559 ||||| ||||| |||| ||||||| ||||| |||||| || ||||||||||| || Sbjct 3197 AAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGC 3138 Query 36560 TGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCG 36619 |||||| || ||| ||||| || | |||||| || | ||||||||||||| | || Sbjct 3137 TGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACG 3078 Query 36620 TCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCC 36679 |||| ||| | | ||||| | |||||| | ||||| |||| ||| || || || Sbjct 3077 ACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACC 3018 Query 36680 GTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGAT 36739 || |||| ||| || || | || ||||||||||||||| ||||| || || | ||| || Sbjct 3017 ATTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAAT 2958 Query 36740 TGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCC 36799 || || | || | || || || || || || |||||||| || || | | ||| Sbjct 2957 AGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCC 2898 Query 36800 TGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAA 36859 || ||||| |||||||||||||| ||||| || ||||| ||||||| ||||| || | Sbjct 2897 AGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAAT 2838 Query 36860 AAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATA 36919 ||| | | ||| || || | | ||||||||| | || |||||||| || | || Sbjct 2837 AAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTA 2778 Query 36920 GAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 36955 || || || | || || || | ||||| ||| || Sbjct 2777 AAGACGATTTTCAGTGCTAGTTATCCAGTTACAGAA 2742 >seq20510 Length=252746 Score = 141 bits (156), Expect = 3e-29 Identities = 134/171 (78%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 35960 AGACTCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTC 36019 || |||| |||| |||||||| || ||||||||||| || ||||| |||||||||||||| Sbjct 30562 AGCCTCAACAGCAGCTAGGTCTAGCGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 30621 Query 36020 CATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGA 36079 ||| || | || |||||||||| ||| ||||||||||| | || | ||| | Sbjct 30622 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACT 30681 Query 36080 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGT 36130 |||||||||||| || ||||| || || || || || || ||||||||||| Sbjct 30682 ATCAACGACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGT 30732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150416242601378