Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq17269 562 9e-156 seq20510 132 1e-26 >seq17269 Length=4150 Score = 562 bits (622), Expect = 9e-156 Identities = 725/996 (73%), Gaps = 6/996 (1%) Strand=Plus/Minus Query 5185 CTCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCAT 5244 |||| |||| ||||| || || ||||||||||||||||| ||||| ||||| |||||||| Sbjct 3734 CTCAACAGCAGCTAGGTCTAGCGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 3675 Query 5245 ACCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTC 5304 ||||||||| |||||||| | | ||| |||||||| || | | || | || Sbjct 3674 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATC 3615 Query 5305 AACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCAT 5364 ||| ||||| || ||||| || || || || || || ||||||||||| || || | Sbjct 3614 AACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAA 3555 Query 5365 AGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCT 5424 || |||| ||| || | || || ||||||| || | ||||||||||||| ||| Sbjct 3554 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 3495 Query 5425 ATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAAT 5484 |||||| || |||||||| |||||||| | || ||||| || || ||||| || ||||| Sbjct 3494 ATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAAT 3435 Query 5485 GTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGT 5544 ||| || |||||||| ||||| |||||| | || || | || ||| | | || Sbjct 3434 GTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 3375 Query 5545 TGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCC 5604 ||||| | || | |||||| || | || ||||||||| || | | || Sbjct 3374 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTAAATAGGGAGCC 3315 Query 5605 ACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGC 5664 |||||||| ||||| ||||| | |||||| || || |||||||| || ||||| || || Sbjct 3314 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGC 3255 Query 5665 CTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAA 5724 ||||||||| | ||||||||| |||||||||||||| || ||||||||||||||| || Sbjct 3254 CTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 3195 Query 5725 ACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTG 5783 |||||| || || | ||||| | || || || | ||||| | || ||||| || |||| Sbjct 3194 ACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAG-CAGCTGCAACAGGAGCTG 3136 Query 5784 AATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTC 5843 ||||||| || |||||| || ||||| || | | | ||||||||||||| | || | Sbjct 3135 AATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGAC 3076 Query 5844 CCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCAT 5903 ||| ||| || | ||||| | ||||| | || | |||| || || || |||| Sbjct 3075 CCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCAT 3016 Query 5904 TGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAAT 5961 |||| ||||||||||| | ||| || ||||||||||| || || || || || ||||| Sbjct 3015 TGTATAGCCATTCATCAACGGAT--GCAGCTTCCCAGATCGGGTAAAAATGCAAACCAAT 2958 Query 5962 TGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCC 6021 || || | || | || ||| ||||| || || |||||||| || || |||||||| Sbjct 2957 AGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCC 2898 Query 6022 TGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATAT 6081 | || |||||||| || || || || || ||||| || ||||| | |||||| | || Sbjct 2897 AGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAAT 2838 Query 6082 AAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATA 6141 ||| | | ||||||||| || | | || ||||| || ||||||||||| || | || Sbjct 2837 AAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTA 2778 Query 6142 GAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || || || | |||||||| | ||||| |||||| Sbjct 2777 AAGACGATTTTCAGTGCTAGTTATCCAGTTACAGAA 2742 >seq20510 Length=252746 Score = 132 bits (146), Expect = 1e-26 Identities = 130/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 5185 CTCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCAT 5244 |||| |||| ||||| || || ||||||||||||||||| ||||| ||||| |||||||| Sbjct 30565 CTCAACAGCAGCTAGGTCTAGCGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 30624 Query 5245 ACCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTC 5304 ||||||||| |||||||| | | ||| |||||||| || | | || | || Sbjct 30625 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATC 30684 Query 5305 AACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGT 5352 ||||||||| || ||||| || || || || || || ||||||||||| Sbjct 30685 AACGACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGT 30732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152610885867102