Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq17269 553 5e-153 seq20510 134 4e-27 >seq17269 Length=4150 Score = 553 bits (612), Expect = 5e-153 Identities = 722/999 (72%), Gaps = 0/999 (0%) Strand=Plus/Minus Query 25437 TGTAGACTCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAAC 25496 || || |||| ||| |||| ||| || ||||||||||| || ||||| ||||||||||| Sbjct 3740 TGGAGCCTCAACAGCAGCTAGGTCTAGCGGGAAGTTGTGAGCATTACGTTCATGCATAAC 3681 Query 25497 TTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTT 25556 |||||| || | || |||||||||| ||| ||||||||||| | || | ||| | Sbjct 3680 TTCCATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTG 3621 Query 25557 GGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGAC 25616 |||||| ||||| || ||||| || || || || || || ||||||||||| | Sbjct 3620 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAAT 3561 Query 25617 TCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACT 25676 || | ||| |||| ||| || | || |||||||| || | ||||||||||||| Sbjct 3560 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 3501 Query 25677 ACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGC 25736 ||| ||| || || |||||||| |||||||| | || ||||| || || ||||| || Sbjct 3500 ACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGC 3441 Query 25737 AACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAG 25796 |||||||| || || ||||||||||| |||||| | || || | || ||||||| Sbjct 3440 TACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATT 3381 Query 25797 CCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAA 25856 | || ||||| | || | ||||| || | |||||||||||| |||| Sbjct 3380 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTAAATAG 3321 Query 25857 AGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTG 25916 | || |||||||| || || ||||| | ||| || || || |||||||| || ||||| Sbjct 3320 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 3261 Query 25917 TTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATC 25976 || ||||| || |||| |||||| |||||||| || || || || |||||||||||||| Sbjct 3260 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 3201 Query 25977 AGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGG 26036 ||| ||||| ||||| |||| ||||||| ||||| |||||| || ||||||||||| Sbjct 3200 AGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGG 3141 Query 26037 GGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTG 26096 |||||||| || ||| ||||| || | ||| || || | ||||||||||||| | Sbjct 3140 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 3081 Query 26097 TCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCC 26156 || |||| ||| | | || | | |||||| | ||||| |||| ||| || || Sbjct 3080 ACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 3021 Query 26157 ACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACC 26216 ||| || || | ||| || || | || ||||||||||||||| ||||| || || | ||| Sbjct 3020 ACCATTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACC 2961 Query 26217 GATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGC 26276 || || ||| | || | || || ||||| || || |||||||| || || | | Sbjct 2960 AATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGA 2901 Query 26277 TCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAAT 26336 ||| || ||||| |||||||||||||| ||||| || ||||| ||||||| ||||| || Sbjct 2900 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGAT 2841 Query 26337 TAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCAC 26396 | ||| | | ||| || || | | ||||||||| | || |||||||| || | Sbjct 2840 AATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 2781 Query 26397 ATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 26435 || || || || | || || || | ||||| ||| || Sbjct 2780 GTAAAGACGATTTTCAGTGCTAGTTATCCAGTTACAGAA 2742 >seq20510 Length=252746 Score = 134 bits (148), Expect = 4e-27 Identities = 134/174 (77%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 25437 TGTAGACTCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAAC 25496 || || |||| ||| |||| ||| || ||||||||||| || ||||| ||||||||||| Sbjct 30559 TGGAGCCTCAACAGCAGCTAGGTCTAGCGGGAAGTTGTGAGCATTACGTTCATGCATAAC 30618 Query 25497 TTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTT 25556 |||||| || | || |||||||||| ||| ||||||||||| | || | ||| | Sbjct 30619 TTCCATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTG 30678 Query 25557 GGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGT 25610 |||||||||||| || ||||| || || || || || || ||||||||||| Sbjct 30679 ACTATCAACGACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGT 30732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151955052238132