Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq18862 95.1 1e-14 >seq18862 Length=32547 Score = 95.1 bits (104), Expect = 1e-14 Identities = 113/152 (74%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 29878 ACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGC 29937 |||||||| | |||| ||| || ||||||||| || |||||||| || || || || Sbjct 12011 ACGTGAGCTAGCATGCTCGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGT 11952 Query 29938 CCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAAC 29997 ||||||||| | || | ||| || ||||| ||||||||||| || ||| |||||| Sbjct 11951 CCCATGTCCACTGAACGCTGATACGTTTGACATGAGAGCTCTCCTTCTGCCACATAAAAC 11892 Query 29998 TGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 || || | ||||| |||||||| ||||| Sbjct 11891 TG-TGCAACATATGGCATGGAGGAAGTGCCAT 11861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408511241563361