Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq19979 138 9e-28 seq20655 132 4e-26 seq19059 132 4e-26 seq18898 123 2e-23 seq20422 116 3e-21 seq19364 113 4e-20 >seq19979 Length=600886 Score = 138 bits (152), Expect = 9e-28 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || |||||||| || || || || || ||||||||||| | || | | Sbjct 465552 ACGCAAGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCCAATGTGCGACC 465493 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | ||||| || || || || | |||||| || || || ||||| |||||||| Sbjct 465492 ATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCTTT 465433 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||||||||| |||||| | || | ||||| || | ||||| |||||||||| Sbjct 465432 GTCTTGAATTTTGGCTTTTACGTTGTCGATGGTGTCGGAGCTCTCCACCTCAAGAGTGAT 465373 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || ||||| ||||| || || || |||||||| Sbjct 465372 GGTCTTCCCGGTCAAAGTCTTAACGAAGATCTGCAT 465337 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| || |||||||| || || || ||||||||||| | ||| | | | || ||| Sbjct 464861 ACCAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGCCAAAGTACGGCCGTCTTCC 464802 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || ||||| || ||||| || | | ||| ||||| || |||||||| || ||||| || Sbjct 464801 AACTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGAGGAATGCCCTCCTTATCCTGG 464742 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| || | || | |||||||| ||||||| ||||| |||| || || Sbjct 464741 ATCTTGGCTTTAACGTTGTCGATTGTGTCAGAACTTTCCACCTCAAGGGTGATAGTCTTT 464682 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | || || || || |||||||| Sbjct 464681 CCGGTGAGTGTCTTGACGAAGATCTGCAT 464653 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 101257 TAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATC 101316 ||| || || || || |||||||| || || |||||||||||||| | ||| | |||| Sbjct 474503 TAAGACCAAGTGGAGAGTAGATTCCTTCTGGATATTGTAATCGGCCAAAGTACGTCCATC 474444 Query 101317 GTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATC 101376 ||||| ||||| || || || || | | ||| ||||| || | |||||| || ||||| Sbjct 474443 TTCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGTAATGCCCTCCTTATC 474384 Query 101377 TTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGT 101436 ||||| || ||| || | || | |||||||| ||||||| ||||| |||| || Sbjct 474383 CTGAATCTTGGCTTTGACGTTGTCGATTGTGTCAGAGCTTTCCACCTCAAGGGTGATAGT 474324 Query 101437 TTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| | || || || || |||||||| Sbjct 474323 CTTTCCGGTGAGTGTCTTGACGAAGATCTGCAT 474291 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || |||||||| || || || ||||| || || | ||| | | | || ||| Sbjct 474727 ACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGGCCGTCTTCC 474668 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || ||||| || || || ||||| | ||| || || || || || || || ||||||||| Sbjct 474667 AACTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCTTGA 474608 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| || || | || | |||||||| | ||||| || || |||| ||| || Sbjct 474607 ATTTTCGCCTTGACGTTATCGATGGTGTCAGAACTCTCCACCTCGAGTGTGATCGTCTTT 474548 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | ||| || || || |||||||| Sbjct 474547 CCGGTGAGAGTCTTGACGAAGATCTGCAT 474519 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || |||||||| ||||| || || || || ||||| || || | || | | Sbjct 465780 ACGCAACACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGACC 465721 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | ||||| || || || || | |||||| || || || ||||||||||| || Sbjct 465720 ATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTT 465661 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || ||||| || || || | || | |||||||| | || ||||||||||||| Sbjct 465660 GTCCTGAATCTTAGCCTTCACGTTATCAATGGTGTCAGAACTCTCAACTTCAAGAGTGAT 465601 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| || || || || || || || || |||||||| Sbjct 465600 CGTCTTTCCCGTCAAGGTCTTAACGAAAATCTGCAT 465565 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| || || || || || ||||| ||||| | || | |||| || Sbjct 466001 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGACCATCCTCG 465942 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || || | |||||| || || || ||||||||||| || || ||| Sbjct 465941 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGA 465882 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | ||||| || | ||||| || || |||| || || Sbjct 465881 ATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTCTTA 465822 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || || || || |||||||| Sbjct 465821 CCGGTCAAGGTCTTCACGAAAATCTGCAT 465793 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| || || || || || || |||||||| || | || | |||| || Sbjct 475411 ACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCAGCCAGTGTACGACCATCCTCA 475352 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || || | |||||| || || || ||||||||||| || || || Sbjct 475351 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGG 475292 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | |||||||| | || ||||| || |||| || || Sbjct 475291 ATCTTGGCCTTCACGTTATCAATGGTGTCAGAGCTCTCAACTTCGAGGGTGATTGTCTTT 475232 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | || || ||||| |||||||| Sbjct 475231 CCGGTAAGGGTCTTGACAAAGATCTGCAT 475203 >seq20655 Length=190867 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || || || || || || || || |||||||||||||| | ||| | | | Sbjct 174456 ACGCAACACCAAGTGGAGAGTCGACTCCTTCTGGATATTGTAATCGGCTAAAGTACGGCC 174515 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || ||||| |||||||| || || || | | || ||||| || ||||||||||| || Sbjct 174516 GTCTTCCAACTGCTTACCGGCGAAGATAAGCCTTTGCTGATCCGGAGGAATGCCTTCCTT 174575 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||| ||||| || ||| || | || | |||||||| ||||||| || || |||| Sbjct 174576 ATCCTGAATCTTGGCTTTAACGTTGTCGATCGTGTCAGAGCTTTCCACCTCGAGGGTGAT 174635 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| || ||||| | ||| || || || |||||||| Sbjct 174636 CGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 174671 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || || || ||||| ||||| || || || | ||| | | |||| || | |||||| ||| Sbjct 174247 GTCGACTCCTTTTGAATATTATAGTCAGCAAGAGTACGGCCATCCTCGAGTTGCTTTCCT 174306 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| ||||| | || || || || || || || || ||||||||||| || || Sbjct 174307 GCAAAGATCAACCTTTGCTGGTCCGGTGGGATTCCCTCCTTATCTTGAATCTTAGCCTTG 174366 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 ||| | || | ||||||||| | ||||| || | ||| | || || ||||| ||||| Sbjct 174367 ACATTGTCAATAGTGTCAGAACTCTCCACCTCCAAAGTAATAGTCTTTCCGGTCAAAGTC 174426 Query 101453 TTTACAAATATCTGCAT 101469 || || || |||||||| Sbjct 174427 TTGACGAAAATCTGCAT 174443 >seq19059 Length=274371 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || || || || || || || || |||||||||||||| | ||| | | | Sbjct 257960 ACGCAACACCAAGTGGAGAGTCGACTCCTTCTGGATATTGTAATCGGCTAAAGTACGGCC 258019 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || ||||| |||||||| || || || | | || ||||| || ||||||||||| || Sbjct 258020 GTCTTCCAACTGCTTACCGGCGAAGATAAGCCTTTGCTGATCCGGAGGAATGCCTTCCTT 258079 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||| ||||| || ||| || | || | |||||||| ||||||| || || |||| Sbjct 258080 ATCCTGAATCTTGGCTTTAACGTTGTCGATCGTGTCAGAGCTTTCCACCTCGAGGGTGAT 258139 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| || ||||| | ||| || || || |||||||| Sbjct 258140 CGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 258175 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || || || ||||| ||||| || || || | ||| | | |||| || | |||||| ||| Sbjct 257751 GTCGACTCCTTTTGAATATTATAGTCAGCAAGAGTACGGCCATCCTCGAGTTGCTTTCCT 257810 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| ||||| | || || || || || || || || ||||||||||| || || Sbjct 257811 GCAAAGATCAACCTTTGCTGGTCCGGTGGGATTCCCTCCTTATCTTGAATCTTAGCCTTG 257870 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 ||| | || | ||||||||| | ||||| || | ||| | || || ||||| ||||| Sbjct 257871 ACATTGTCAATAGTGTCAGAACTCTCCACCTCCAAAGTAATAGTCTTTCCGGTCAAAGTC 257930 Query 101453 TTTACAAATATCTGCAT 101469 || || || |||||||| Sbjct 257931 TTGACGAAAATCTGCAT 257947 >seq18898 Length=1351152 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || | || || || || || || || ||||||||||| |||| ||| | | Sbjct 748874 ACGCAACACAAGGTGGAGCGTGGACTCCTTCTGAATATTGTAATCCGCGAGAGTACGTCC 748815 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || || | |||||||| ||||| || | | ||| || || || || || || ||||| Sbjct 748814 GTCTTCGAGCTGCTTACCGGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCTTT 748755 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||| || ||| ||| || | || | |||||||| | || ||||| || |||| Sbjct 748754 ATCTTGGATCTTTGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCGACTTCGAGGGTGAT 748695 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||||||||| ||||| || ||||| |||||||| Sbjct 748694 GGTTTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 748659 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | || ||| | ||| ||||||||||| || || || || || |||||||| || Sbjct 749113 CCACCACGTAGACGAAGAACCAAATGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCA 749054 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | || || | ||||| || || || || | | ||| ||||| || || Sbjct 749053 AGCGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGTCTCTGCTGATCTGGTGGG 748994 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || ||||| || || || | || | |||||||| | || || Sbjct 748993 ATCCCTTCCTTGTCCTGAATCTTAGCCTTGACGTTATCGATCGTGTCAGAGCTCTCAACC 748934 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||| | || || || || ||||| || ||||| |||||||| Sbjct 748933 TCCAAAGTAATAGTCTTTCCTGTCAAAGTCTTGACAAAGATCTGCAT 748887 >seq20422 Length=233597 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| || || || ||||| ||||| || || || |||||||||||||| Sbjct 131137 CCTCCACGCAGACGCAACACCAAGTGAAGCGTAGACTCCTTCTGAATATTGTAATCGGCC 131078 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| || | ||||| || || || || | |||||| ||||| || ||| Sbjct 131077 AAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGA 131018 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || ||||| || || || || ||| || | || | |||||| || |||| || Sbjct 131017 ATACCCTCTTTGTCCTGGATCTTGGCTTTAACGTTGTCAATAGTGTCGGAGCTTTCAACC 130958 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| || || || || | || || ||||| |||||||| Sbjct 130957 TCCAAAGTGATAGTCTTTCCCGTCAGGGTCTTGACAAAGATCTGCAT 130911 >seq19364 Length=374643 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 101240 TTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCG 101299 ||||| || | | ||| | ||| | ||||| || || ||||| || || |||| || Sbjct 235180 TTTCCACCACGGAGACGGAGAACAAGGTGAAGAGTTGACTCTTTCTGAATGCTGTAGTCC 235239 Query 101300 GCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | | ||| || |||| || | ||||| ||||||||||||| | ||| || || || Sbjct 235240 CCTAAAGTCCTACCATCCTCGAGCTGCTTCCCTGCAAATATCAGCCTCTGCTGGTCCGGT 235299 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 |||| |||||||| |||||||| || || || | || | || ||||| | || Sbjct 235300 TGAATCCCTTCTTTGTCTTGAATCTTGGACTTCACGTTATCAATCGTATCAGAGCTCTCG 235359 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| |||| || || || || ||||| || |||||||||||||| Sbjct 235360 ACCTCAAGTGTGATGGTCTTTCCCGTCAAAGTCTTGACAAATATCTGCAT 235409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396175253314449