Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq17269 610 7e-170 seq20510 156 5e-33 >seq17269 Length=4150 Score = 610 bits (676), Expect = 7e-170 Identities = 725/979 (74%), Gaps = 18/979 (2%) Strand=Plus/Plus Query 162522 TGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGC 162581 ||| ||||| | || | || ||||| ||||| |||||||||||| ||| | | Sbjct 2765 TGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATT---GAC 2821 Query 162582 AGCAACTTGC---TTCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTAT 162638 ||||||| | || || || ||||||||||| || |||||||| ||||| |||||||| Sbjct 2822 CGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTAT 2881 Query 162639 CAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGT 162698 | ||||||||| | || || ||||| || || ||||| || || || ||||| | | Sbjct 2882 TCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTAT 2941 Query 162699 TCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGA 162758 ||||| ||| ||||||||| | || || || || ||||||||||| ||| | |||| Sbjct 2942 TCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGA 3001 Query 162759 TGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAAT 162818 ||| ||| | || |||||||| |||| |||| | || | ||||| | | || | Sbjct 3002 TGAATGGCTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGT 3061 Query 162819 CACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTG 162875 ||| | | | |||||| ||||||||||| || ||| | |||||||||||||| Sbjct 3062 ---AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTG 3118 Query 162876 GATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCC 162935 ||| ||||||||| || || || || | || || ||||| |||||| |||| || Sbjct 3119 GATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCC 3178 Query 162936 TTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTA 162995 | |||||||| ||| ||||| | |||||||| || || ||||||||||| |||| Sbjct 3179 AATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTT 3238 Query 162996 CATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGT 163055 ||| | || ||||| || ||||||||||| || |||||||| || || ||| | || || Sbjct 3239 TATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGT 3298 Query 163056 CGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTC 163115 || ||||||||||| || || || |||||||||||||||||||| | || |||||| Sbjct 3299 AGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCACGGTTCCTTGGTAACTTCTAG 3358 Query 163116 TCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGA 163175 | | ||||| ||||| || || | || || || | ||||| | ||||| ||||| Sbjct 3359 TTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGA 3418 Query 163176 AGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTA 163235 |||||| |||||||||||||| |||||||| || || ||||| || ||||||||||| || Sbjct 3419 AGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATA 3478 Query 163236 TGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTG 163295 ||| ||||||||| || ||||| | || |||||| | || || | || || || | Sbjct 3479 TGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGG 3538 Query 163296 CATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTT 163355 || ||||| ||||| | ||| | |||||||| |||||||| || |||||||| || Sbjct 3539 TATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTT 3598 Query 163356 CAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCT 163412 ||||||||| || ||||| ||| || || ||| ||||||||| ||||| | Sbjct 3599 CAACCAATCAGTAGTTGATAGTCAAGGACGT---GTTATTAATACTTGGGCTGATATTAT 3655 Query 163413 TAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACT 163472 |||| | || |||||||||||||||||||| || |||||||||||||||||||| || Sbjct 3656 TAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCGCT 3715 Query 163473 TGACCTTGCTGCTGCTGAG 163491 ||||| ||||||| |||| Sbjct 3716 AGACCTAGCTGCTGTTGAG 3734 >seq20510 Length=252746 Score = 156 bits (172), Expect = 5e-33 Identities = 154/198 (78%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 163297 ATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTC 163356 || ||||| ||||| | ||| | |||||||| |||||||| || |||||||| ||| Sbjct 30759 ATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTC 30700 Query 163357 AACCAATCCGTCGTTGACGC---AGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTT 163413 |||||||| |||||||| ||| || || ||| ||||||||| ||||| || Sbjct 30699 AACCAATCAGTCGTTGATAGTCAAGGACGT---GTTATTAATACTTGGGCTGATATTATT 30643 Query 163414 AACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTT 163473 ||| | || |||||||||||||||||||| || |||||||||||||||||||| || Sbjct 30642 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCGCTA 30583 Query 163474 GACCTTGCTGCTGCTGAG 163491 ||||| ||||||| |||| Sbjct 30582 GACCTAGCTGCTGTTGAG 30565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552937147099080