Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq20199 168 1e-36 >seq20199 Length=1256174 Score = 168 bits (186), Expect = 1e-36 Identities = 436/658 (66%), Gaps = 10/658 (2%) Strand=Plus/Plus Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGG 48099 ||||||| |||| |||| || || || | |||||| ||| ||||| ||| ||| | Sbjct 343328 AAACTCCCTCTCGATCTCAACCGCGTCACATACAATCGACTTCACGCGCTCCTCCGAGAG 343387 Query 48100 TTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTC 48159 || | | || | || || |||| | |||||| || || | ||| ||||||||||| Sbjct 343388 CTTCGTCCTCAAGAGCGTG---TAGATAAGGCAGGCGAAATCGCAGTGTAAGCCTTCGTC 343444 Query 48160 CCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCA 48219 || ||| | | |||||||||| | |||||||||| || | | |||||||| Sbjct 343445 TCGTGAGATCAACTCGTTGGAGAAAGTCAACCCAGGCATGAGACCTCGTTTCTTGAGCCA 343504 Query 48220 GAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAG 48279 ||| |||| ||| ||| ||||||||||| || || || ||||| ||| || Sbjct 343505 GAAGATTGAGCAGAAGCTGCCTGAGAAGAAGATACCTTCGACGCAAGCGAAGGCGACGAT 343564 Query 48280 CCTCTCTCCGAAAGAA-GCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCT 48338 ||||| |||||| | | || || |||||| | ||||| | || || | Sbjct 343565 TCTCTCAGCGAAAGTCTGAGATCCA-TC---GATCCACTTCATGGCCCATTGGGCTTTTT 343620 Query 48339 TCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCG 48398 | || ||| || || || || |||||||| ||||| | | | ||| ||| Sbjct 343621 TAGCGACGCAAGGGATTGTTTCGATGGCCCGAAAGAGATGGTCTCTCTCTTTGTTGTCTT 343680 Query 48399 CAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCT 48458 | || || ||| || ||||||||| ||||| | |||||| || ||||||| Sbjct 343681 TGATGTAAGTGTCGAGGAGGAGACTGTACATCTCCGAGTGGATATTCTCAATCGCGATCT 343740 Query 48459 GGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC- 48517 ||||||||||||| || | || ||| | || ||||| || | ||| | | ||| Sbjct 343741 GGAACCCGTAGAAAGCACGCGCTTCAGAGACTTGCACATCGGACATGAA-CCGTGAAGCG 343799 Query 48518 AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAA 48577 |||||||| || || || || || || || ||||| || ||||| ||||| | ||| Sbjct 343800 AGATTCTCGAGAACGATTCCGTCAGATGCGGCGAAGAAAGCGAGGACGTGTTTGATGAAG 343859 Query 48578 TGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCT 48637 || | ||| || | ||||| | |||| | | |||||| || || |||||| Sbjct 343860 TGCCTCTCTCCGTCGTTGAGATTCTCCCAGTCGCGACCGTCTTGAGATAGATCGACTTCT 343919 Query 48638 TCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATAGT 48695 || | |||||||| || || ||||| |||||||| |||| || | || |||| Sbjct 343920 TCAGCCGTCCAGAAAGATGCTTCGGCTTTCTTGTACATCTCCCAGATCTGAGGGTAGT 343977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931284115674880