Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq17269 679 0.0 seq20510 578 4e-160 seq19338 408 4e-109 seq19441 104 2e-17 seq7960 87.8 2e-12 >seq17269 Length=4150 Score = 679 bits (752), Expect = 0.0 Identities = 726/955 (76%), Gaps = 8/955 (1%) Strand=Plus/Plus Query 8290 GGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTACAATTTGC---TTCAT 8345 || |||||||| ||| | |||||||| ||| || ||| |||| || || | || || Sbjct 2784 GGATGGTTTGGTGTTTTGATGATCCCTACC-TTATTGACCGCAAC---TTCCGTTTTTAT 2839 Query 8346 TACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGG 8405 || ||||||| ||||||||||||| || || || || || || || ||||| ||| |||| Sbjct 2840 TATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGG 2899 Query 8406 ATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAAT 8465 |||||| | ||||| ||||| || || || ||||| || |||| | ||| || || Sbjct 2900 ATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTAT 2959 Query 8466 TGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGG 8525 ||| | || || ||||| ||||||||||| || || ||||||| ||||| ||||| || Sbjct 2960 TGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAATGG 3019 Query 8526 TGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCG 8585 ||||||||| | || | ||| | ||||| | ||||| || | |||||||||||| Sbjct 3020 TGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCG 3079 Query 8586 TGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGC 8645 ||| ||||||||| || ||| || || |||||||||||||| ||||||||| || || Sbjct 3080 TGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGC 3139 Query 8646 TCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTC 8705 ||||||||| |||||| ||||||| ||| | |||| || |||||||||| || || Sbjct 3140 TCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTC 3199 Query 8706 TGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGA 8765 ||||||||||||||| || ||||| ||||| ||||||| |||| |||| ||||||||||| Sbjct 3200 TGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGA 3259 Query 8766 GCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATC 8825 ||||||||| || |||||||| || |||||| | ||||| |||||||| |||||||| || Sbjct 3260 GCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTC 3319 Query 8826 TCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGA 8885 || ||| || ||||| ||||| | || |||||| || | | || ||||| || Sbjct 3320 CCTATTTAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGA 3379 Query 8886 AACCGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGT 8945 || || ||| || | || |||| |||||||||||||| ||||||||||||||||| Sbjct 3380 AAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGT 3439 Query 8946 TGCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAG 9005 || ||||| || || ||||| || ||||||||||||||||| ||| ||||||||| | Sbjct 3440 AGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCG 3499 Query 9006 AAGCTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGG 9065 || ||||||||| | || || ||||| || || || || |||||||| || | || Sbjct 3500 TTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGG 3559 Query 9066 CGTCTCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGG 9125 | || |||||||||||||| ||||| ||||| |||||||| || | | || | Sbjct 3560 TATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAG 3619 Query 9126 ACAAGGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGA 9185 |||||||| || | || || ||||| || | ||||||| || || |||||||| Sbjct 3620 TCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGA 3679 Query 9186 AGTCATGCACGAAAGAAACGCACACAACTTCCCGCTTGACCTTGCGGCTGCTGAG 9240 ||| ||||| ||| | || || |||||||||||||| ||||| || |||| |||| Sbjct 3680 AGTTATGCATGAACGTAATGCTCACAACTTCCCGCTAGACCTAGCTGCTGTTGAG 3734 >seq20510 Length=252746 Score = 578 bits (640), Expect = 4e-160 Identities = 727/998 (73%), Gaps = 0/998 (0%) Strand=Plus/Plus Query 9815 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGA 9874 ||||| || | ||||||||| | | || ||||| |||||||| ||||||||||| Sbjct 62277 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 62336 Query 9875 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTT 9934 ||| | || ||||| ||| ||| | || | || || ||| | || || || || ||| Sbjct 62337 CTATTGCTCTTTCCGTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 62396 Query 9935 GTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTCCTT 9994 || || ||||| ||||| ||| | || ||| || | || ||| ||||| | Sbjct 62397 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 62456 Query 9995 ACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 10054 || || || || || || |||||| || | | | |||||| | | |||| |||||| Sbjct 62457 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 62516 Query 10055 CCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTG 10114 ||||| | || |||||||| || ||| || | || || || ||||||||||| Sbjct 62517 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 62576 Query 10115 GCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGA 10174 || |||||||| || ||||| ||||| || ||||||||||| || ||||| || || || Sbjct 62577 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 62636 Query 10175 TTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTC 10234 | || | | |||||||| ||||| ||||| || ||||| || |||||||||||||| Sbjct 62637 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTT 62696 Query 10235 AGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGC 10294 ||| || || || |||||||| || || ||| |||||||||||||||| ||||| || Sbjct 62697 TCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 62756 Query 10295 GTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAAT 10354 || ||||| || || || ||| | ||||| |||| || |||||||||||||| | || Sbjct 62757 GTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACATTGAAC 62816 Query 10355 CCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCAC 10414 || || |||||||||||||| || ||| ||||||| | ||| || |||| || || || Sbjct 62817 CCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCAT 62876 Query 10415 GGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCT 10474 || | ||||||||||| || | | | ||||||| || ||||| || ||| ||| Sbjct 62877 GGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCT 62936 Query 10475 TTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCC 10534 ||| | ||||||| ||||| || ||||| ||||| || |||||||| || ||||| Sbjct 62937 TTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCA 62996 Query 10535 CAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTA 10594 || || ||||| |||||||| ||||||||| ||| | |||||||||||| | |||||| Sbjct 62997 CAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTA 63056 Query 10595 CCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGT 10654 || || | ||| | |||| | || ||||| | | ||||| ||| | || || ||| Sbjct 63057 CCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGT 63116 Query 10655 GCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTC 10714 || || || || || || || || ||| | || | |||||||| ||||||||||| ||| Sbjct 63117 GCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTC 63176 Query 10715 TATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCAA 10774 ||||| || ||||| ||| | ||||||||| |||| || |||||||| | || || Sbjct 63177 TATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAG 63236 Query 10775 CCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812 || || |||| | || | ||||| || || ||||| || Sbjct 63237 CCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 63274 Score = 123 bits (136), Expect = 3e-23 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 9073 ACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGA 9132 || |||||||||||||| ||||| ||||| |||||||| || | | || | |||||| Sbjct 30732 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTCGTTGATAGTCAAGGA 30673 Query 9133 CGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATG 9192 || || | || || ||||| || | ||||||| || || ||||||||||| ||| Sbjct 30672 CGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATG 30613 Query 9193 CACGAAAGAAACGCACACAACTTCCCGCTTGACCTTGCGGCTGCTGAG 9240 || ||| | || || |||||||||||||| ||||| || |||| |||| Sbjct 30612 CATGAACGTAATGCTCACAACTTCCCGCTAGACCTAGCTGCTGTTGAG 30565 >seq19338 Length=76300 Score = 408 bits (452), Expect = 4e-109 Identities = 595/837 (71%), Gaps = 3/837 (0%) Strand=Plus/Plus Query 9977 GAGGGTGCTAATTTCCTTACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCT 10036 || ||| | ||||| | || || || || | || |||||| || | | | |||||| Sbjct 38317 GAAGGTTCCAATTTTTTAACTGCTGCAGTTTTTACTCCTGCTAATATTTTAGCGCATTCT 38376 Query 10037 CTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGG 10096 | | |||| ||||||||||| | || |||||||| || ||| || | || Sbjct 38377 TTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGC 38436 Query 10097 GGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTT-ATGTTACG 10155 || | || | || ||| || ||||||| || ||||| ||||| || ||| |||||||| Sbjct 38437 GGTATGTGCGATTATGTTGCTGTCCACGGTGCTTTCGCATTAATAGGTTTTTATGTTACG 38496 Query 10156 CCAGTTTGAGCTGGCGAGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGG 10215 || ||||| || || ||| || | | |||||||| ||||| ||||| || ||||| Sbjct 38497 TCAATTTGAACTTGCTCGATCCGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGG 38556 Query 10216 GCCTATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTT 10275 || |||||||||||||| | | || || || |||||||| || || ||| ||||||| Sbjct 38557 TCCAATTGCTGTTTTTGTTTCTTTCTTTCTAATGTATCCACTAGGTCAATCTGGTTGGTT 38616 Query 10276 CTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTT 10335 ||||||||| ||||| || || ||||| | || || ||| | ||||| |||| || || Sbjct 38617 CTTTGCGCCTAGTTTTGGTGTAGCGGCTTTATTTCGATTCATCCTCTTTTTCCAAGGGTT 38676 Query 10336 TCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGC 10395 |||||||||||| | || || || |||||||||||||| || ||| |||||| | ||| Sbjct 38677 TCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGACGCGGC 38736 Query 10396 GCTCCTATCAGCAATCCACGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACA 10455 || |||| || || || || | |||||| |||| || | | | ||||||| || Sbjct 38737 TCTGCTATGCGCTATTCATGGTGCTACTGTA-AAAATACTTTATTTAAAGATGGTGATGG 38795 Query 10456 AGCAAACACTTTCAAAGCTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTAC 10515 ||||| || ||| ||||| | ||||||| |||||| || ||||| ||||| || Sbjct 38796 TGCAAATACATTCCGTACTTTTAACCCAACTCAAGCAGAAGAAACTTATTCAATGGTCAC 38855 Query 10516 TGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCA 10575 ||||||| || ||||| || || ||||| ||||||| |||||| | ||| || Sbjct 38856 CGCTAACCACTTTTGGTCACAAATCTTTGGGGCTGCTTTTTCCAATAAGTGTTGGTAACA 38915 Query 10576 TTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGG 10635 || ||||||| | |||||||| || ||| | | || | || ||||| | | || Sbjct 38916 TTCCTTTATGTTATTTGTACCGGTACCAGGTTTATTGATGAGTGCTCTTGGAGTAGTCGG 38975 Query 10636 TCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGA 10695 ||| ||| | || || | | | || || || || || || || || | || | ||||| Sbjct 38976 TCTAGCTTTGAACCTACATCCCTATGACTTCGTTTCCCAGGAAATTCGTGCAGCGGAAGA 39035 Query 10696 TCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATG 10755 ||| ||||||||||| |||||||| || ||||| ||| | ||||||||| |||| || || Sbjct 39036 TCCGGAATTTGAGACTTTCTATACTAA-AATATTCTTTTAAACGAAGGTATTCGCGCTTG 39094 Query 10756 GATGGCACCAGTTGACCAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812 ||| || | || || || || |||| | || | ||||| || || ||||| || Sbjct 39095 GATTGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 39151 >seq19441 Length=80586 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 10202 ATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCACTCGGA 10261 ||||| || ||||| | |||||||||||||| ||| || || || |||||||| || Sbjct 18201 ATCGCATTCTCTGGTCTAATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGT 18260 Query 10262 CAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTC 10321 || ||| ||||||||||||||| ||||| || || ||| | || || || || | ||| Sbjct 18261 CAATCTGGTTGGTTCTTTGCGCGTAGTTTTGGTGTAGCGACTATATTTCGTATCATCCTC 18320 Query 10322 TTCCTCCAGGGCTTTCATAA 10341 || |||| || |||||||| Sbjct 18321 TTTTTCCAAGGGTTTCATAA 18340 >seq7960 Length=315 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 10646 AATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTT 10705 || || ||||| || || || || || || || ||| | | | ||||||||||||||| Sbjct 3 AACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTACAGCGGAAGATCCTGAATTT 62 Query 10706 GAGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGC 10761 ||||| ||||| || || ||||| ||| | ||||| ||| ||||||| ||| |||| Sbjct 63 GAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGCTGGC 118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516342119208000