Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq17269 684 0.0 seq20510 536 1e-147 seq19338 354 9e-93 seq20877 105 7e-18 >seq17269 Length=4150 Score = 684 bits (758), Expect = 0.0 Identities = 750/996 (75%), Gaps = 6/996 (1%) Strand=Plus/Plus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 || ||||||||| | || ||||| || || || ||||| |||| ||||| || || || Sbjct 2742 TTCTGTAACTGGATAACTAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 2801 Query 160936 ATGATTCC---CTGCTTGCTCGCTGCTACCATTTGTTTCATCATTGCCTTCGTTGGTGCT 160992 ||||| || || ||| ||| || || ||| | | ||| || ||| ||| |||| Sbjct 2802 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC---GCATTCATTGCTGCT 2858 Query 160993 CCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAAC 161052 || || || || || || || ||||||||||| || |||| || || | || |||||| Sbjct 2859 CCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAAC 2918 Query 161053 AACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCC 161112 || || || || ||||| |||| ||| ||||| ||||| ||| |||| || ||||| Sbjct 2919 AATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCG 2978 Query 161113 ATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTT 161172 ||||||||||| ||| | || |||||||| ||||| |||||||||| |||| || Sbjct 2979 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAATGGTGGTCCTTATGAACTAATT 3038 Query 161173 GTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTAC 161232 || | ||||| | |||| | | ||| ||||||||||||||||||||| || | Sbjct 3039 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 3098 Query 161233 CGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGT 161292 |||||||| ||||||||||||||| || ||||| || |||||||| || || || | | Sbjct 3099 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACT 3158 Query 161293 GCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGC 161352 || || ||| || |||| || | |||||||| ||| ||||||| |||||||| || Sbjct 3159 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 3218 Query 161353 ATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCAC 161412 ||||||||||| ||||||| ||| |||| ||||| || |||||||||||||| |||||| Sbjct 3219 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 3278 Query 161413 CCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCAC 161472 || || || ||| | || ||||| ||||| || ||||| || || || ||||| |||||| Sbjct 3279 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAC 3338 Query 161473 GGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTAT 161532 ||||| |||| || ||| || | | |||||||| ||||| || || || | Sbjct 3339 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 3398 Query 161533 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTC 161592 ||||||| ||||||||||||||||| || |||||||| || ||||| ||||| || || Sbjct 3399 GGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTT 3458 Query 161593 GGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTT 161652 || || |||| |||||||| ||| |||||||| || || || | || |||||| | Sbjct 3459 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 3518 Query 161653 GCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTC 161712 || |||||||| || || || || ||||| ||||| | || | || || ||||| ||| Sbjct 3519 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTC 3578 Query 161713 AACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAAC 161772 ||||| ||||||||||| |||||||| || | ||||||||||| || ||||| || Sbjct 3579 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAAT 3638 Query 161773 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAAT 161832 || ||||| || || | ||||||||| ||||| |||||||| ||||| || || ||| Sbjct 3639 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 3698 Query 161833 GCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGAG 161868 |||||||||||||| || ||||| ||||||| |||| Sbjct 3699 GCTCACAACTTCCCGCTAGACCTAGCTGCTGTTGAG 3734 >seq20510 Length=252746 Score = 536 bits (594), Expect = 1e-147 Identities = 729/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 162117 TTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 162176 |||||| | | || |||||| | || ||||| ||||||||||| || |||||||| Sbjct 62277 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 62336 Query 162177 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTC 162236 || | || ||||| ||| ||| | ||| | ||||||||| | || || || || || Sbjct 62337 CTATTGCTCTTTCCGTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 62396 Query 162237 GTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTTCTT 162296 || || ||||||||||| ||| | || ||||||||| | || ||| || ||| | Sbjct 62397 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 62456 Query 162297 ACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGT 162356 || || |||||||||||||| || | | | | |||||| | || | || |||||| Sbjct 62457 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 62516 Query 162357 CCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTG 162416 ||||| | ||||| || || | || ||||| ||| | || || || ||| ||||||| Sbjct 62517 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 62576 Query 162417 GCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA 162476 || |||||||| || || ||| | |||||||| ||| | || || |||||||| || ||| Sbjct 62577 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 62636 Query 162477 -CTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGT 162535 || || | | || ||||| ||||| || || ||||| ||||| |||||||| || || Sbjct 62637 TCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 62695 Query 162536 TAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGG 162595 | ||| ||||| || ||||| | || ||||| |||||||| || || || || Sbjct 62696 TTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 62755 Query 162596 GGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAA 162655 || || || || || |||||| | ||||| ||||||| || ||||| ||||| | || Sbjct 62756 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACATTGAA 62815 Query 162656 TCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCA 162715 || ||||| |||||||| || || ||| | || || | || |||| | |||||||| Sbjct 62816 CCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCA 62875 Query 162716 TGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAAAGC 162775 ||| | || || |||||||| | | |||||||| || ||||| || || || Sbjct 62876 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 62935 Query 162776 ATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGGTC 162835 ||| || | || || | |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 62936 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 62995 Query 162836 ACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTTGT 162895 ||| || || || |||||||| || || |||||||| |||||||||||| | ||||| Sbjct 62996 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 63055 Query 162896 TCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCAATCTTCG 162955 || || | ||| | |||| ||| || | || | | || || ||| | || || || Sbjct 63056 ACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACG 63115 Query 162956 TGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGAGACGTT 163015 ||| || ||||| || || || ||| | ||||| || ||||| || || |||||||| || Sbjct 63116 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 63175 Query 163016 CTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGTGGACCA 163075 |||||| || || |||||| | || ||||| |||| || ||| | || | || || Sbjct 63176 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCA 63235 Query 163076 ACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGCTCT 163129 |||||||| ||| || | |||||||| ||||| | ||| | || |||||||| Sbjct 63236 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 63289 Score = 168 bits (186), Expect = 7e-37 Identities = 156/198 (79%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 161671 GGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTGAATGGTTTCAAC 161730 || || ||||| ||||| | || | || || ||||| |||||||| ||||||||||| Sbjct 30762 GGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAAT 30703 Query 161731 TTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACACCTGGGCAGACGTTCTC 161790 |||||||| || ||||||||||||| || ||||| || || ||||| || || | Sbjct 30702 TTCAACCAATCAGTCGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATT 30643 Query 161791 AACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCTCACAACTTCCCTCTT 161850 ||||||||| ||||| |||||||| ||||| || || ||||||||||||||||| || Sbjct 30642 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCGCTA 30583 Query 161851 GACCTTGCTGCTGCTGAG 161868 ||||| ||||||| |||| Sbjct 30582 GACCTAGCTGCTGTTGAG 30565 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 157691 GGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAAT 157750 ||| |||||||||||||||||||||| ||| |||||| ||| | ||| | ||||| ||| Sbjct 96393 GGGATGTAGCGCAGCTTGGTAGCGCGTTTGTTTTGGGTACAAAATGTCACGGGTTCAAAT 96334 Query 157751 CCTGTCACCCCGACTTAT 157768 ||||||| ||| || ||| Sbjct 96333 CCTGTCATCCCTACCTAT 96316 >seq19338 Length=76300 Score = 354 bits (392), Expect = 9e-93 Identities = 596/856 (70%), Gaps = 11/856 (1%) Strand=Plus/Plus Query 162279 GAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCT 162338 || ||| | || ||| | ||||| ||||||| |||||| || | | | | |||||| Sbjct 38317 GAAGGTTCCAATTTTTTAACTGCTGCAGTTTTTACTCCTGCTAATATTTTAGCGCATTCT 38376 Query 162339 CTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGG 162398 | || | || ||||||||||| | ||||| || || | || ||||| ||| | || Sbjct 38377 TTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGC 38436 Query 162399 GGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTC-ATGCTTCG 162457 || | || || ||| || ||||||| || || ||| | |||||||| ||| | || Sbjct 38437 GGTATGTGCGATTATGTTGCTGTCCACGGTGCTTTCGCATTAATAGGTTTTTATGTTACG 38496 Query 162458 CCAGTTTGAACTGGCACGACTTATCGGT---ATT-CGTCCTTACAATGCTATTGCTTTCT 162513 || |||||||| || ||| || || ||| || ||||| ||||| || || |||| Sbjct 38497 TCAATTTGAACTTGCTCGA----TCCGTTCAATTGCGACCTTATAATGCAATCGCATTCT 38552 Query 162514 CAGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCT 162573 | ||||| |||||||| || ||| | | ||||| || ||||| | || ||||| | Sbjct 38553 CTGGTCCAATTGCTGTTTTTGTTTCTTTCTTTCTAATGTATCCACTAGGTCAATCTGGTT 38612 Query 162574 GGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAG 162633 ||||||| || || || || || || || | || |||||| | ||||| |||||| Sbjct 38613 GGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTTTATTTCGATTCATCCTCTTTTTCCAAG 38672 Query 162634 GGTTCCATAACTGGACGCTAAATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTG 162693 |||| ||||| ||||| | || || ||||| |||||||| || || ||| | || | | Sbjct 38673 GGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGACG 38732 Query 162694 GTGCATTGCTCTCTGCTATTCATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCG 162753 || |||| | ||||||||||| | || | | ||||||| | | ||||||| | Sbjct 38733 CGGCTCTGCTATGCGCTATTCATGGTGCTACTG-TAAAAATACTTTATTTAAAGATGGTG 38791 Query 162754 AACAAGCAAACACTTTTAAAGCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGG 162813 | ||||| || || | ||| || | || || | |||||||| ||||| |||| Sbjct 38792 ATGGTGCAAATACATTCCGTACTTTTAACCCAACTCAAGCAGAAGAAACTTATTCAATGG 38851 Query 162814 TTACTGCGAACCGCTTCTGGTCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGT 162873 | || || |||| ||| |||||||| || || || ||||||| || ||| |||||| Sbjct 38852 TCACCGCTAACCACTTTTGGTCACAAATCTTTGGGGCTGCTTTTTCCAATAAGTGTTGGT 38911 Query 162874 TGCATTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTA 162933 |||| ||||||| | ||||| || || ||| | | || ||| || | || | Sbjct 38912 AACATTCCTTTATGTTATTTGTACCGGTACCAGGTTTATTGATGAGTGCTCTTGGAGTAG 38971 Query 162934 TTGGACTCGCTCTCAATCTTCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAG 162993 | || || ||| | || || | | | || ||||| || || || ||| ||||||| || | Sbjct 38972 TCGGTCTAGCTTTGAACCTACATCCCTATGACTTCGTTTCCCAGGAAATTCGTGCAGCGG 39031 Query 162994 AAGACCCTGAGTTTGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAG 163053 |||| || || |||||||| |||||||| || || |||||| | || ||||| |||| | Sbjct 39032 AAGATCCGGAATTTGAGACTTTCTATACTAA-AATATTCTTTTAAACGAAGGTATTCGCG 39090 Query 163054 CATGGTTAGCACCAGTGGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGC 163113 | ||| | || | || || |||||||| ||| || | |||||||| ||||| | | Sbjct 39091 CTTGGATTGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTAC 39150 Query 163114 CAAGAGGCAACGCTCT 163129 || | | |||||||| Sbjct 39151 CACGTGAAAACGCTCT 39166 >seq20877 Length=376463 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 158325 GTGTGAAGACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTA 158384 ||| || |||||| ||| |||| ||||| ||||||||||| || |||| | ||| Sbjct 300500 GTGCGACGACGACGTCTACGTCCTCGACGCTGCTGAGGAAGCCGGAATCGATTTGCCTTA 300441 Query 158385 CTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGA 158444 ||| |||||||| || |||| ||| ||||| || ||| | || |||| | || || Sbjct 300440 CTCTTGCCGTGCCGGTTCTTGCTCGAGCTGTGCCGGTAAAGTTGTTGCTGGATCTGTTGA 300381 Query 158445 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTG 158504 ||| |||||| ||||| || |||||||| || | | || || |||| ||||| Sbjct 300380 CCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGGTGAAGGGTTTGTTCTCACTTG 300321 Query 158505 TGTTTCTTATCCTACAAGTGATTGTGTGATTGAGACTGACAAGGAAGAGGA 158555 || |||| ||||| |||| | |||||||| |||| ||||| || Sbjct 300320 TGCCGCTTACCCTACCTCTGATGTTACCATTGAGACCCACAAAGAAGAAGA 300270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547600972038120