Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq20510 567 9e-157 seq17269 536 2e-147 seq19338 394 1e-104 seq21340 111 2e-19 seq19441 82.4 1e-10 >seq20510 Length=252746 Score = 567 bits (628), Expect = 9e-157 Identities = 736/1016 (72%), Gaps = 6/1016 (1%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | ||| | ||||| ||||| |||| || ||||||||| || ||||| Sbjct 63289 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 63230 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| || || | |||||| || || || || || || || ||||| ||| Sbjct 63229 TGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGAAAGTC 63170 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| ||||| | ||| || ||||| || |||||||| ||||| ||| Sbjct 63169 TCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGG 63110 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || | ||| ||||| | | || | | ||| |||| | ||| | || || ||||| Sbjct 63109 TTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACCGGTACAAAT 63050 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 | |||||||||||| ||||| | ||||| ||| |||| ||||||||||| ||||| Sbjct 63049 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTGACCAA 62990 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 || ||||| || || |||||||||||||| ||||| |||| || | | || || | Sbjct 62989 AAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGCACGG 62930 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| ||||||||||||| | | ||| || || ||||| |||| || || Sbjct 62929 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 62870 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | ||||| || | ||||| | ||| || || ||||||||||| |||||||| | Sbjct 62869 GCGCATAGCAGAGCCGCGCCCAGTACACCGGCGACTCCCATCATATGAAATGGGTTCAAT 62810 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||| ||||| || || || | ||||| | ||||| |||||| || || |||||||| Sbjct 62809 GTCCAATTATGAAATCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACACCAAAA 62750 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 |||||||||||||||| || || || || ||||| || ||||| ||| |||||| Sbjct 62749 CTAGGCGCAAAGAACCAACCAGATTGACCTAGTGGATAAATTAGAAAGACAGAAACAAAA 62690 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 ||||| || || |||||||| || || ||||| || || || | | || | | ||| Sbjct 62689 ACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAACAGATCGAGCA 62630 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | || |||||||| | ||| ||||| || | || || || ||||||||||| |||||| Sbjct 62629 AGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCGCCGTGGAGAGCAACAAAA 62570 Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489 ||||| || || || | ||| ||| | ||||||||||| |||||||||||||| Sbjct 62569 GCCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCAC 62510 Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549 |||| | | |||||| | | | | |||||| || || || ||||| || | ||| Sbjct 62509 AGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCAGCGGTTAAAAAA 62450 Query 102550 TTAGCACCTTCAAGGTA---ACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAAC 102606 || |||||| | || ||||| | | || || |||||||| ||||| |||| Sbjct 62449 TTGCAACCTTCTAAATAGGAACTAGCC---AATCCATGAGTATACCATGAAGTTACAAAG 62393 Query 102607 GTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCA 102666 || || || || | ||| ||||| | |||| ||| ||| ||||| || | ||| ||| Sbjct 62392 GTTGTACCTGTGAACCAACCCCCCAAAGCGAAATAGGCACACGGAAAGAGCAATAGACCA 62333 Query 102667 GACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722 |||||||| ||||| || ||||| || | | ||||||||||| || ||||| Sbjct 62332 GACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 62277 Score = 156 bits (172), Expect = 5e-33 Identities = 155/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 103162 AGACTCTGCAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTC 103221 || ||| ||||||| ||||| || |||||||||||||| ||||| || ||||| ||||| Sbjct 30562 AGCCTCAACAGCAGCTAGGTCTAGCGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 30621 Query 103222 CATACCCAGACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACC 103281 |||||| || ||| ||||| | || || ||||| || || | ||||| || |||| Sbjct 30622 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACT 30681 Query 103282 ATCAAGGATGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACC 103341 ||||| || || |||||||| ||||| || || |||||||| ||||| || |||| ||| Sbjct 30682 ATCAACGACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACC 30741 Query 103342 AAGTGCGGTGAACCAGATACC 103362 | || || ||||| ||||| Sbjct 30742 TAAAGCAGTAAACCAAATACC 30762 >seq17269 Length=4150 Score = 536 bits (594), Expect = 2e-147 Identities = 699/972 (72%), Gaps = 6/972 (1%) Strand=Plus/Minus Query 103162 AGACTCTGCAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTC 103221 || ||| ||||||| ||||| || |||||||||||||| ||||| || ||||| ||||| Sbjct 3737 AGCCTCAACAGCAGCTAGGTCTAGCGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 3678 Query 103222 CATACCCAGACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACC 103281 |||||| || ||| ||||| | || || ||||| || || | ||||| || |||| Sbjct 3677 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACT 3618 Query 103282 ATCAAGGATGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACC 103341 ||||| | || |||||||| ||||| || || |||||||| ||||| || |||| ||| Sbjct 3617 ATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACC 3558 Query 103342 AAGTGCGGTGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG 103401 | || || ||||| ||||| ||||| || | Sbjct 3557 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 3498 Query 103402 GGAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTAC 103461 || |||||||| || |||||||||||||| || || || ||||| ||||| ||||| Sbjct 3497 AGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTAC 3438 Query 103462 GATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTC 103521 |||||||| || ||||| ||||| ||||| ||||||| | || ||||||| |||| Sbjct 3437 AATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTC 3378 Query 103522 AGTCGTCTCAC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTG 103580 || || || | || | | | || | || |||| ||||||||||||||||| || || | Sbjct 3377 TGTGGTTTCCCTGATCAAACTAGAAGTTACCAAG-GAACCGTGCATAGCACTAAATAGGG 3319 Query 103581 AACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTT 103640 | || ||||| || ||||| || || | |||||| || |||||||| |||||||| || | Sbjct 3318 AGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCT 3259 Query 103641 CGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGG 103700 | || ||||| || | ||| ||||||| || || || || || | ||||||| |||| | Sbjct 3258 CAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAG 3199 Query 103701 AGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAG 103760 | || |||||||||| ||||||| |||||| || || | ||||| |||||||||| Sbjct 3198 AAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAG 3139 Query 103761 CAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCAC 103820 | || ||||| ||| ||||| || ||||| ||||||||| | | ||||||||||| Sbjct 3138 CTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCAC 3079 Query 103821 GTCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCAC 103880 | |||||||| | | |||| | ||||| | || | |||| ||||||||| Sbjct 3078 GACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCAC 3019 Query 103881 CGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAA 103940 | || || ||||| ||||||| ||||| |||||||| || || || || || | ||||| Sbjct 3018 CATTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAA 2959 Query 103941 TTGCGTTGGAGGAG--GGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGA 103998 | || || || || |||| || ||||| || || || ||||| ||||| | || || Sbjct 2958 TAGC--TGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGA 2901 Query 103999 ACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAAC 104058 |||| || ||||||||||| || || ||||| || ||||| || || | ||| || | Sbjct 2900 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGAT 2841 Query 104059 GATGAAGCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAAC 104118 || || | ||||| | ||| | || |||||||||| ||||| ||||| |||| Sbjct 2840 AATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 2781 Query 104119 ATAGAGACGGTT 104130 || ||||| || Sbjct 2780 GTAAAGACGATT 2769 >seq19338 Length=76300 Score = 394 bits (436), Expect = 1e-104 Identities = 601/852 (71%), Gaps = 3/852 (0%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| | | ||| | ||||| ||||| |||| || ||||||||| || ||||| Sbjct 39166 AGAGCGTTTTCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 39107 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | || | ||| || || | |||||| || || || || || || || ||||| ||| Sbjct 39106 TGAGCCGCAATCCAAGCGCGAATACCTTCGTTTAAAAGAATATT-TTAGTATAGAAAGTC 39048 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| ||||| | || || ||||| || |||||||| | | | ||| Sbjct 39047 TCAAATTCCGGATCTTCCGCTGCACGAATTTCCTGGGAAACGAAGTCATAGGGATGTAGG 38988 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || | ||| ||||| | | || | | ||| || | | ||| || || ||||| Sbjct 38987 TTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCAATAAACCTGGTACCGGTACAAAT 38928 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 | ||||||| |||| |||| | |||||| ||| ||| ||||||||||| ||||| Sbjct 38927 AACATAAAGGAATGTTACCAACACTTATTGGAAAAAGCAGCCCCAAAGATTTGTGACCAA 38868 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 || |||| || || |||||||||||||| ||||| |||| || | | || | | Sbjct 38867 AAGTGGTTAGCGGTGACCATTGAATAAGTTTCTTCTGCTTGAGTTGGGTTAAAAGTACGG 38808 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| ||||||||||| | | | ||| || | ||||| |||| || || Sbjct 38807 AATGTATTTGCACCATCACCATCTTTAAATAAAGTATTTTT-ACAGTAGCACCATGAATA 38749 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | ||||| || | |||| | ||| || || ||||||||||| |||||||| | Sbjct 38748 GCGCATAGCAGAGCCGCGTCCAGTACACCGGCGACTCCCATCATATGAAATGGGTTCAAT 38689 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||| ||||| || || || | ||||| | ||||| ||||| || || |||||||| Sbjct 38688 GTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATAAAGCCGCTACACCAAAA 38629 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 |||||||||||||||| || || || || ||||| || ||||| | | |||||| Sbjct 38628 CTAGGCGCAAAGAACCAACCAGATTGACCTAGTGGATACATTAGAAAGAAAGAAACAAAA 38569 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 ||||| || || |||||||| || || ||||| || || || | | || | | ||| Sbjct 38568 ACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAACGGATCGAGCA 38509 Query 102370 AACTCGAATTGACGAAGCAT-GAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAA 102428 | || |||||||| | ||| ||||| || | || || |||||||||| ||| ||| | Sbjct 38508 AGTTCAAATTGACGTAACATAAAAACCTATTAATGCGAAAGCACCGTGGACAGCAACATA 38449 Query 102429 AGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCA 102488 | | || | || || | ||| ||| | ||||||||||| |||||||||||||| Sbjct 38448 ATCGCACATACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCA 38389 Query 102489 AAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAA 102548 |||| | | |||||| | | | | |||||| || | || ||||| || | || Sbjct 38388 CAGTAACAACAAAGAATGCGCTAAAATATTAGCAGGAGTAAAAACTGCAGCAGTTAAAAA 38329 Query 102549 ATTAGCACCTTC 102560 ||| | |||||| Sbjct 38328 ATTGGAACCTTC 38317 >seq21340 Length=206869 Score = 111 bits (122), Expect = 2e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 102823 TGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCATCCAGAAAGGA 102882 |||||| ||||| || |||| |||| ||||| || | ||||| || || ||||| || Sbjct 40901 TGGGTAAGCCACACAAGTCAAAACATAACCTTTCTCCAAGTGATCATCCTCAAGAAACGA 40960 Query 102883 TTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGAACACGCACC 102942 ||| || || || ||| |||||||||||||||||||| ||||||||||| Sbjct 40961 ACCATCAGACTGGTCCACTTCACCTTTCTCAATCTTACCAGCACAAGTGGAACACGCACC 41020 Query 102943 AGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAGAATATATTG 103002 ||| | || || ||||||| ||||| || ||||| ||||| || |||| || || || Sbjct 41021 AGCTCTGCAAGAGTAAGGCAAGTCAACTCCAGCTTCTTCAGCTGCATCTAATATGTACTG 41080 Query 103003 ATCATC 103008 || || Sbjct 41081 GTCGTC 41086 >seq19441 Length=80586 Score = 82.4 bits (90), Expect = 1e-10 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 102196 TTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAACGAGGGC 102255 ||||| || || || | ||||| | || | |||||| | || |||||||| || Sbjct 18340 TTATGAAACCCTTGGAAAAAGAGGATGATACGAAATATAGTCGCTACACCAAAACTACGC 18281 Query 102256 GCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAAACAGCG 102315 ||||||||||||| || || || || ||||| || ||||| ||| ||||||||||| Sbjct 18280 GCAAAGAACCAACCAGATTGACCTAGTGGATAAATTAGAAAGACAGAAACAAAAACAGCA 18221 Query 102316 ATAGGCCCAGAGAACGCAAT 102335 || | |||||||| || || Sbjct 18220 ATTAGACCAGAGAATGCGAT 18201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633344475625560