Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq17269 542 8e-150 seq20510 143 8e-30 >seq17269 Length=4150 Score = 542 bits (600), Expect = 8e-150 Identities = 706/974 (72%), Gaps = 2/974 (0%) Strand=Plus/Minus Query 21460 CCTCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAA 21519 |||| || | || ||||| |||||||||||||| || || || |||||||| || || | Sbjct 3735 CCTCAACAGCAGCTAGGTCTAGCGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCA 3676 Query 21520 AGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAG 21579 |||||||| |||||||||| ||| |||||||| || || || || |||| | | | Sbjct 3675 TACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTAT 3616 Query 21580 CTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAA 21639 | | | |||||||| || ||||||||||| | |||||||||||| ||| | || | Sbjct 3615 CAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTA 3556 Query 21640 GCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGG 21699 |||| ||||||||||||||| || ||||| || || | |||||||| | | ||| | Sbjct 3555 AAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAG 3496 Query 21700 AATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAA 21759 |||| || || ||||||||||||||||| | || |||||||| ||||||||||| |||| Sbjct 3495 AATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAA 3436 Query 21760 TATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAG 21819 | |||||||| ||||| |||||||| || ||||||| | || || | | ||| | Sbjct 3435 TGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTG 3376 Query 21820 TCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCC 21879 | || || | || | || || |||| | ||||||||||||| || | | Sbjct 3375 TGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTAAATAGGGAGC 3316 Query 21880 CACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAG 21939 | || ||||| || || ||||| | ||||||||| || ||||||||||| |||||||||| Sbjct 3315 CGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAG 3256 Query 21940 CCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAA 21999 ||||||| || | ||| ||||||| || || || || || | |||||| ||||||||| Sbjct 3255 CCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAA 3196 Query 22000 AAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAG 22059 || || || |||| || || | | ||| |||||||| ||||| || |||||||| | Sbjct 3195 AACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTG 3136 Query 22060 AGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTC 22119 | || |||||| ||||| || | ||| || || || | |||||||||||||| || | Sbjct 3135 AATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGAC 3076 Query 22120 CCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGT 22179 |||| ||| | || |||| | ||||| | || | |||| | ||||| || | Sbjct 3075 CCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCAT 3016 Query 22180 TGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGG 22239 |||| ||||||||||||| | ||||||||||| || ||||| || || | || || | Sbjct 3015 TGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAG 2956 Query 22240 CATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAG 22299 | | | |||| | ||| ||||| || || ||||| || || | || || |||| Sbjct 2955 CTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAG 2896 Query 22300 CGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAA 22359 || ||||| || || ||||| || || || || || || ||| || |||||||||| Sbjct 2895 AAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAA 2836 Query 22360 AACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAA 22418 || | || |||| ||| ||| | || ||||| | || || |||||||| | ||| Sbjct 2835 AAACGGAAGTTGCGGTCAATAAGGTA-GGGATCATCAAAACACCAAACCATCCAATGTAA 2777 Query 22419 AGACGGTTATTAGT 22432 ||||| || | ||| Sbjct 2776 AGACGATTTTCAGT 2763 >seq20510 Length=252746 Score = 143 bits (158), Expect = 8e-30 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 21460 CCTCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAA 21519 |||| || | || ||||| |||||||||||||| || || || |||||||| || || | Sbjct 30564 CCTCAACAGCAGCTAGGTCTAGCGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCA 30623 Query 21520 AGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAG 21579 |||||||| |||||||||| ||| |||||||| || || || || |||| | | | Sbjct 30624 TACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTAT 30683 Query 21580 CTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAA 21639 | | | |||||||| || ||||||||||| | |||||||||||| ||| | || | Sbjct 30684 CAACGACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTA 30743 Query 21640 GCGCAGCAAACCAAATACC 21658 |||| |||||||||||| Sbjct 30744 AAGCAGTAAACCAAATACC 30762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146170919549460